Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_009545.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq3439 122 2e-24 seq3283 116 6e-23 seq22495 100 5e-18 seq5745 96.9 6e-17 seq953 93.3 7e-16 seq77518 89.7 9e-15 seq20728 84.2 4e-13 seq815 80.6 5e-12 seq442 78.8 2e-11 seq54129 77.0 6e-11 >seq3439 Length=62978 Score = 122 bits (134), Expect = 2e-24 Identities = 196/282 (70%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 1718 GATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCGTACTTTC 1777 ||||||| || | |||| | || ||||| |||||||||||||| || |||||||||||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1778 TGTTGCTTTGCCAGTTTGTTTGGGACCCCATGAATTCTTTATAGTGCT------TTAGAT 1831 |||| ||||| ||| || | || | ||| | || ||| |||| ||| || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1832 AGTGCGGGTCGACGTCATCTATTACGTTATACCATGCGTCGTTAGAGAACACATTAGGGT 1891 | | ||| ||| ||||| || |||||||||||||| || || ||| || || | | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1892 TTAAGTCTAAATGTCCACATAAGTAATTATGTGGCCCTAATGACCTGGCCCACAACGTTT 1951 | || || | | ||| || ||| || ||||| |||||||| | ||||| |||| Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTT 717 Query 1952 TCCCGGTTCGACTTTCACCTTCAATGACAATGCCTTTGGGCC 1993 |||| ||| | |||||||| | ||||| |||||| Sbjct 716 TCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 675 >seq3283 Length=49157 Score = 116 bits (128), Expect = 6e-23 Identities = 199/289 (69%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 1711 GGACCTGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCG 1770 || || |||||||| || | |||| | || ||||| |||||||||||||| || || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1771 TACTTTCTGTTGCTTTGCCAGTTTGTTTGGGACCCCATGAATTCTTTATAGTGCT----- 1825 |||||| ||| ||||| ||| || | || | ||| | || ||| |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1826 -TTAGATAGTGCGGGTCGACGTCATCTATTACGTTATACCATGCGTCGTTAGAGAACACA 1884 ||| ||| | ||| |||||| || || |||||||||||||| || || ||| || Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1885 TTAGGGTTTAAGTCTAAATGTCCACATAAGTAATTATGTGGCCCTAATGACCTGGCCCAC 1944 || | || || || | | ||| || ||| || ||||| |||||||| | ||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1945 AACGTTTTCCCGGTTCGACTTTCACCTTCAATGACAATGCCTTTGGGCC 1993 |||||||| ||| | |||||||| | ||||| |||||| Sbjct 2043 GCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq22495 Length=567 Score = 100 bits (110), Expect = 5e-18 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 1711 GGACCTGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCG 1770 || || |||||||| || | |||| | | ||||| | |||||||||||| || |||||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1771 TACTTTCTGTTGCTTTGCCAGTTTGTTTGGGACCCCATGAATTCTTTATAGTGCT----- 1825 |||||| ||| |||||||| || | || | ||| | || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1826 -TTAGATAGTGCGGGTCGACGTCATCTATTACGTTATACCATGCGTCGTTAGAGAACACA 1884 ||| ||| | ||| || |||||| || |||||||||||||| || || ||| || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 191 Query 1885 TTAGGGTTTAAGTCTAAATGTCCACATAAGTAATTATGTGGCCCTAATGA 1934 || | || || || ||| ||| || ||| || ||||| |||||||| Sbjct 190 TTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq5745 Length=45059 Score = 96.9 bits (106), Expect = 6e-17 Identities = 215/320 (67%), Gaps = 11/320 (3%) Strand=Plus/Plus Query 1684 TCTAAAAACTCTGTATATGAAGAGGTTGGACCT---GGATTGCAGAGGAAGATAGTGGGT 1740 ||||| ||| || |||| || | |||||| |||||||| | | |||| || Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1741 ATCCCACCTTTAATTTGAACCGGCTTTCCGTACTTTCTGTTGCTTTGCCAGTTTGTTTGG 1800 |||||||||||||||||||| || || ||||||||| || ||||| || ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1801 GACCCCATGAATTCTTTATAGTGCT------TTAGATAGTGCGGGTCGACGTCATCTATT 1854 | || ||||| | || ||| || | ||| ||| || || |||||| || Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1855 ACGTTATACCATGCGTCGTTAGAGAACACATTAGGGTTTAAGTCTA-AATGTCCACATAA 1913 |||||||||||||||||||| || | || | || || || | || | ||| || Sbjct 43688 ACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCA-TTAT 43746 Query 1914 GTAATTATGTGGCCCTAATGACCTGGCCCACAACGTTTTCCCGGTTCGACTTTCACCTTC 1973 ||||||||||| || || || | ||||| | ||||| ||| ||| | | | | Sbjct 43747 ATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACCGATTCTAGAAGGTCTTGC 43806 Query 1974 AATGACAATGCCTTTGGGCC 1993 ||| | ||||| ||||| || Sbjct 43807 AATAATAATGCTTTTGGACC 43826 >seq953 Length=224861 Score = 93.3 bits (102), Expect = 7e-16 Identities = 196/291 (67%), Gaps = 10/291 (3%) Strand=Plus/Plus Query 1711 GGACCTGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCG 1770 || || |||||||| | | |||| | || ||||| ||||||||||||| | |||||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1771 TACTTTCTGTTGCTTTGCCAGTTTGTTTGGGACCCCATGAATTCTTTATAGTGCTTT--- 1827 |||||| ||| ||||| | | || || | ||| | || ||| | |||| Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1828 ---AGATAGTGCGGGTCGACGTCATCTATTACGTTATACCATGCGTCGTTAGAGAACACA 1884 | ||| | ||| |||||| || || |||||||||||||| || || ||| || Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTT 2019 Query 1885 TTAGGGTTTAAGTC--TAAATGTCCACATAAGTAATTATGTGGCCCTAATGACCTGGCCC 1942 || | || || || ||||| || || ||| || ||||| |||||||| | |||| Sbjct 2020 TTCGAATTAAAATCCATAAATCTC--ATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2077 Query 1943 ACAACGTTTTCCCGGTTCGACTTTCACCTTCAATGACAATGCCTTTGGGCC 1993 | |||||||| ||| | |||||||| | ||||| |||||| Sbjct 2078 ATGCTGTTTTCCCTATTCTTGATGTGCCTTCAATAATAATGCTCATGGGCC 2128 >seq77518 Length=14724 Score = 89.7 bits (98), Expect = 9e-15 Identities = 193/286 (67%), Gaps = 11/286 (4%) Strand=Plus/Minus Query 1714 CCTGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCGTAC 1773 || |||||||| || | |||| || ||||| |||||||||||||| | ||| ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1774 TTTCTGTTGCTTTGCCAGTTTGTTTGGGACCCCATGAATTCTTTATAGTGCT------TT 1827 ||| || || ||||| ||| | || | ||| | || ||| |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1828 AGATAGTGCGGGTCGACGTCATCTATTACGTTATACCATGCGTCGTTAGAGAACACATTA 1887 | ||| || ||| ||||| || ||||||||||| |||||||| ||| | || Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTC 2221 Query 1888 GGGTTTAAGTCTA-AATGTCCACATAAGTAATTATGTGGCCCTAATGACCTGGCCCACAA 1946 || || || | || | ||| || ||||||||||| || || | | ||||| | Sbjct 2220 AAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCCAAAC 2162 Query 1947 CGTTTTCCCGGTTCGACTTTCACCTTCAATGACAATGCCTTTGGGC 1992 ||||| ||| ||| | | |||||||| | |||| ||||||| Sbjct 2161 TGTTTTACCGATTCTAGGT---CCTTCAATAATAATGTTTTTGGGC 2119 >seq20728 Length=3653 Score = 84.2 bits (92), Expect = 4e-13 Identities = 171/253 (68%), Gaps = 7/253 (3%) Strand=Plus/Plus Query 1738 GGTATCCCACCTTTAATTTGAACCGGCTTTCCGTACTTTCTGTTGCTTTGCCAGTTTGTT 1797 || ||||| ||||||||||||| || |||||||||||| ||| |||| ||| Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1798 TGGGACCCCATGAATTCTTTATAGTGCT------TTAGATAGTGCGGGTCGACGTCATCT 1851 || | || | ||| | || ||| |||| ||| ||| | ||| ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1852 ATTACGTTATACCATGCGTCGTTAGAGAACACATTAGGGTTTAAGTCTAAATGTCCACAT 1911 || |||||||| ||||| || || ||| || || | || || |||| | || | Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATAAATCTCATT 1620 Query 1912 AAGTAATTATGTGGCCCTAATGACCTGGCCCACAACGTTTTCCCGGTTCGACTTTCACCT 1971 | ||| || ||||| ||||||| | ||||| |||||||| ||| | ||| Sbjct 1621 ATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGCCT 1680 Query 1972 TCAATGACAATGC 1984 ||||| | ||||| Sbjct 1681 TCAATAATAATGC 1693 >seq815 Length=151552 Score = 80.6 bits (88), Expect = 5e-12 Identities = 191/289 (66%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 1711 GGACCTGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCG 1770 || || |||||||| || | ||| | || ||||| |||||||||||| | || ||| || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1771 TACTTTCTGTTGCTTTGCCAGTTTGTTTGGGACCCCATGAATTCTTTATAGTGCT----- 1825 |||||| ||| | |||||| || | || | ||| | || ||| | || Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1826 -TTAGATAGTGCGGGTCGACGTCATCTATTACGTTATACCATGCGTCGTTAGAGAACACA 1884 ||| ||| | | | |||||| || || |||||||||||||| || || ||| || Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 85245 Query 1885 TTAGGGTTTAAGTCTAAATGTCCACATAAGTAATTATGTGGCCCTAATGACCTGGCCCAC 1944 || | || || || | | ||| || ||| || |||| |||||| | | ||||| Sbjct 85244 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCCCAT 85185 Query 1945 AACGTTTTCCCGGTTCGACTTTCACCTTCAATGACAATGCCTTTGGGCC 1993 ||||||| ||| | |||||||| | ||||| |||||| Sbjct 85184 GTTATTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 85136 >seq442 Length=237535 Score = 78.8 bits (86), Expect = 2e-11 Identities = 189/282 (67%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 1711 GGACCTGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCG 1770 || || |||||||| || |||| | || ||| | |||||||||||||| | |||||| Sbjct 22778 GGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAACTGATTTTCCG 22837 Query 1771 TACTTTCTGTTGCTTTGCCAGTTTGTTTGGGACCCCATGAATTCTTTATAGTGCT----- 1825 |||||| ||| ||| ||| | ||| | || | ||| | || ||| |||| Sbjct 22838 TACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTTAATAATGCTTTTTA 22897 Query 1826 -TTAGATAGTGCGGGTCGACGTCATCTATTACGTTATACCATGCGTCGTTAGAGAACACA 1884 ||| ||| | || |||||| || || |||||||||| ||| || || ||| || Sbjct 22898 ATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TGCATCATTTGAGTACGTT 22955 Query 1885 TTAGGGTTTAAGTC--TAAATGTCCACATAAGTAATTATGTGGCCCTAATGACCTGGCCC 1942 || || || || ||||| || || ||| || ||||| |||||||| | || | Sbjct 22956 TTCAAATTAAAATCAATAAATCTC--ATTATGTAGTTGTGTGGGCCTAATGAACGAGCTC 23013 Query 1943 ACAACGTTTTCCCGGTTCGACTTTCACCTTCAATGACAATGC 1984 | |||||||| ||| | |||||||| | ||||| Sbjct 23014 ATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGC 23055 >seq54129 Length=2260 Score = 77.0 bits (84), Expect = 6e-11 Identities = 121/174 (70%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 1711 GGACCTGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCG 1770 || || |||||||| || | |||| | || ||||| ||||||||||||| || |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1771 TACTTTCTGTTGCTTTGCCAGTTTGTTTGGGACCCCATGAATTCTTTATAGTGCT----- 1825 |||||| ||| || ||||| || | || | ||| | || || |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1826 -TTAGATAGTGCGGGTCGACGTCATCTATTACGTTATACCATGCGTCGTTAGAG 1878 ||| ||| | ||| ||| || || || |||||||||||| | || || ||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAG 2087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8718100348230