Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_009546.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq3283 100 5e-18 seq3439 96.9 6e-17 seq5745 91.5 3e-15 seq22495 84.2 4e-13 seq35612 77.0 6e-11 seq4104 77.0 6e-11 >seq3283 Length=49157 Score = 100 bits (110), Expect = 5e-18 Identities = 187/269 (70%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 1662 TCCAAGTACTCTTTATATGAT-GATGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGAT 1720 |||||| || |||||| ||| ||| || || |||||||| || | |||| |||| || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1721 TCCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGC 1780 || ||||||||||||| ||||||||||||||| | ||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1781 CCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGGTCTACGTCATCTATGAC 1834 || | ||| | || | | |||| ||| || | || ||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1835 GTTGTACCATGCATCATTGCTGTACACCTTTGGGCTTAAA--CCAAGGTGCCCACATAAA 1892 ||| |||||||||||||| |||| ||||| ||||| ||| |||| || Sbjct 2131 GTTATACCATGCATCATTTGAGTAC-GTTTTGGAATTAAAATCCATAAATCCCA-TTATG 2074 Query 1893 TAATTATGTGGACCCAATGACCTGGCCCA 1921 || || ||||| || ||||| | ||||| Sbjct 2073 TAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 184/268 (69%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 1662 TCCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATT 1721 || ||| || |||||| ||| || || || ||||||| || | |||| |||| || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1722 CCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCC 1781 || ||||||||||||| |||||| |||||||| | |||| ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1782 CCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGGTCTACGTCATCTATGACG 1835 || | ||| | || | | |||| ||| || | || || ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1836 TTGTACCATGCATCATTGCTGTACACCTTTGGGCTTAAA--CCAAGGTGCCCACATAAAT 1893 || |||||||||||||| |||| ||||| ||||| ||| |||| || | Sbjct 810 TTATACCATGCATCATTTGAGTAC-GTTTTGGAATTAAAATCCATAAATCCCA-TTATGT 753 Query 1894 AATTATGTGGACCCAATGACCTGGCCCA 1921 | || ||||| || ||||| | ||||| Sbjct 752 AGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq5745 Length=45059 Score = 91.5 bits (100), Expect = 3e-15 Identities = 194/285 (68%), Gaps = 15/285 (5%) Strand=Plus/Plus Query 1662 TCCAAGTACTCTTTATATGATGATGTTGGGCCT---GGATTGCAGAGGAAGATAGTTGGG 1718 || ||| || ||||||| ||| | ||| || |||||||| | | |||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1719 ATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGG 1778 || |||||||||||||||| |||||| |||||||| | || ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1779 GCCCCCATGAATTCTT--TAAAGTGCTTTAGGTA------GTGGGGGTCTACGTCATCTA 1830 || || ||||| | || ||| || |||| || ||| || | |||||| | Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAA 43685 Query 1831 TGACGTTGTACCATGCATCATTGCTGTACACCTTTGGGCTTAAA-CCAAGGTGCCCACAT 1889 ||||||| |||||||| || || || || | | ||| ||| ||||| | Sbjct 43686 TGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCA-TT 43744 Query 1890 AAATAATTATGTGGACCCAATGACCTGGCCCACATTGTCTTGCCG 1934 | |||||||||||||||||| || | ||||| | ||| || ||| Sbjct 43745 ATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACCG 43789 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 130/186 (70%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1673 TTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATTCCACCTTTAAT 1732 |||||| ||| | || || |||||||| || | |||| || | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1733 TTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1792 ||||| |||||| |||||||| | ||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1793 TTTAAAGTGCT------TTAGGTAGTGGGGGTCTACGTCATCTATGACGTTGTACCATGC 1846 || | | |||| ||| || | || | |||||| |||||||| |||||||| Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1847 ATCATT 1852 |||||| Sbjct 206 ATCATT 201 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1662 TCCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATT 1721 |||||| | |||||| ||| | || || |||||||| || | |||| |||| || Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1722 CCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCA 1768 || ||||||||||||| |||||| |||||||| | |||| ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1662 TCCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATT 1721 |||||| || |||||| ||| | || || |||||||| || | |||| |||| || Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1722 CCACCTTTAATTTGAATTGGTTTCCCGTACTT 1753 || ||||||||||||| |||||| |||||||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8705312522270