Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_009547.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq3283 102 1e-18 seq3439 93.3 7e-16 seq22495 84.2 4e-13 seq35612 80.6 5e-12 seq4104 80.6 5e-12 seq3059 77.0 6e-11 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 197/286 (69%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 1657 TCCAAGTACTCTTTATACGATGAAGTTGGTCCTGGATTGCAAAGGAAGATTGTCGGGATA 1716 |||||| || |||||| ||| | ||||| ||||||||||| | ||| | || || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2251 Query 1717 CCTCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCC 1776 || ||||||||||||| ||||||||||||||| | ||| ||||| | | || || Sbjct 2250 CCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2191 Query 1777 CCCATGAATTCCTTGA-AATGTTTC------AGGTAGTGGGGGTCGACGTCATCGATTAC 1829 || | ||| | |||| |||| ||| | || | || |||||| ||||| || Sbjct 2190 CCTACGAACT-GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1830 GTTGTACCACGCATCATTGCTGTAGACCTTTGGGCTT-AGGTCCAGATGTCCACACAGAT 1888 ||| ||||| |||||||| ||| ||||| || | |||| | ||| | | Sbjct 2131 GTTATACCATGCATCATTTGAGTA-CGTTTTGGAATTAAAATCCATAAATCCCATTATGT 2073 Query 1889 AGTTGTGTGGGCCTAGAGATCGTGCCCACATCGTCTTCCCGGTTCT 1934 ||||||||||||||| || || ||||| || ||||| |||| Sbjct 2072 AGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCT 2027 >seq3439 Length=62978 Score = 93.3 bits (102), Expect = 7e-16 Identities = 195/286 (68%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 1657 TCCAAGTACTCTTTATACGATGAAGTTGGTCCTGGATTGCAAAGGAAGATTGTCGGGATA 1716 || ||| || |||||| ||| | ||||| |||||||||| | ||| | || || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1717 CCTCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCC 1776 || ||||||||||||| |||||| |||||||| | |||| ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1777 CCCATGAATTCCTTGA-AATGTTTC------AGGTAGTGGGGGTCGACGTCATCGATTAC 1829 || | ||| | |||| |||| ||| | || | || ||| |||||||| || Sbjct 870 CCTACGAACT-GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1830 GTTGTACCACGCATCATTGCTGTAGACCTTTGGGCTT-AGGTCCAGATGTCCACACAGAT 1888 ||| ||||| |||||||| ||| ||||| || | |||| | ||| | | Sbjct 811 GTTATACCATGCATCATTTGAGTA-CGTTTTGGAATTAAAATCCATAAATCCCATTATGT 753 Query 1889 AGTTGTGTGGGCCTAGAGATCGTGCCCACATCGTCTTCCCGGTTCT 1934 ||||||||||||||| || || ||||| || ||||| |||| Sbjct 752 AGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCT 707 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 168/244 (69%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 1668 TTTATACGATGAAGTTGGTCCTGGATTGCAAAGGAAGATTGTCGGGATACCTCCTTTAAT 1727 |||||| ||| || ||||| ||||||||||| | ||| | | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1728 TTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1787 ||||| |||||| |||||||| | ||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACT- 268 Query 1788 CTTGA-AATGTTTC------AGGTAGTGGGGGTCGACGTCATCGATTACGTTGTACCACG 1840 |||| |||| ||| | || | || || ||||||||| ||||| ||||| | Sbjct 267 GTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATG 208 Query 1841 CATCATTGCTGTAGACCTTTGGGCTT-AGGTCCAGATGTCCACACAGATAGTTGTGTGGG 1899 ||||||| ||| ||||| || | |||| | ||| | |||||||||||| Sbjct 207 CATCATTTGAGTA-CGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGG 149 Query 1900 CCTA 1903 |||| Sbjct 148 CCTA 145 >seq35612 Length=1588 Score = 80.6 bits (88), Expect = 5e-12 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1657 TCCAAGTACTCTTTATACGATGAAGTTGGTCCTGGATTGCAAAGGAAGATTGTCGGGATA 1716 |||||| | |||||| ||| || ||||| ||||||||||| | ||| | || || Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1717 CCTCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCA 1763 || ||||||||||||| |||||| |||||||| | |||| ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 80.6 bits (88), Expect = 5e-12 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1657 TCCAAGTACTCTTTATACGATGAAGTTGGTCCTGGATTGCAAAGGAAGATTGTCGGGATA 1716 |||||| || |||||| ||| || ||||| ||||||||||| | ||| | || || Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1717 CCTCCTTTAATTTGAATTGGTTTCCCGTACTT 1748 || ||||||||||||| |||||| |||||||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq3059 Length=182465 Score = 77.0 bits (84), Expect = 6e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1657 TCCAAGTACTCTTTATACGATGAAGTTGGTCCTGGATTGCAAAGGAAGATTGTCGGGATA 1716 |||||| || ||||| ||| || ||||| ||||||||||| | ||| | || || Sbjct 20446 TCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20387 Query 1717 CCTCCTTTAATTTGAATTGGTTTCCCGTACTT 1748 || |||||||||||||||||||| ||||| || Sbjct 20386 CCGCCTTTAATTTGAATTGGTTTTCCGTAATT 20355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8692524696310