Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_009644.1 Length=2677 Score E Sequences producing significant alignments: (Bits) Value seq3283 134 2e-28 seq490 109 9e-21 seq54129 104 4e-19 seq953 104 4e-19 seq22495 100 5e-18 seq815 91.5 2e-15 seq442 91.5 2e-15 seq5745 89.7 9e-15 seq30129 84.2 4e-13 seq3059 84.2 4e-13 seq35612 82.4 1e-12 seq4104 77.0 5e-11 >seq3283 Length=49157 Score = 134 bits (148), Expect = 2e-28 Identities = 219/308 (71%), Gaps = 12/308 (4%) Strand=Plus/Minus Query 1544 TCGAAGAACTCCTTATATGATGAAGTAGGCCCAGGATTGCAGAGGAAGATTGTTGGAATC 1603 || |||||| ||||| ||| | ||| ||||||||||| || | ||| |||||||| Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2251 Query 1604 CCTCCATTTATTTGAATTGGTTTGCCGTAC-TTGCAGTTGGACTGCCAGTCTCTCTGGGC 1662 || || || ||||||| |||||| |||||| ||||| |||| |||||| | || ||| || Sbjct 2250 CCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCA-TTGGCCTGCCAATTTCGCTGTGC 2192 Query 1663 CCCCATAAATTCCTTCAT-ATGCT------TTAGATAGTGCGGGTCGACATCATCAATGA 1715 || | || | || || ||||| ||| ||| | ||| ||| || || |||| Sbjct 2191 GCCTACGAACT-GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGA 2133 Query 1716 CGTTGTACCAGGCCTCATTTGAATACACTTTTGGGCTT-AGATCAAGATGTCCACAAAGA 1774 |||| ||||| || |||||||| ||| |||||| || | ||| | | ||| | Sbjct 2132 CGTTATACCATGCATCATTTGAGTAC-GTTTTGGAATTAAAATCCATAAATCCCATTATG 2074 Query 1775 TAATTGTGACGACCCAAACTTCTGGCCCATAATGTTTTCCCTGTCCTAGATGGACCTTCA 1834 || ||||| | || || | |||||| |||||||||| | || ||||| |||||| Sbjct 2073 TAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGCCTTCA 2014 Query 1835 ATGATAAT 1842 || ||||| Sbjct 2013 ATAATAAT 2006 >seq490 Length=137872 Score = 109 bits (120), Expect = 9e-21 Identities = 200/285 (70%), Gaps = 10/285 (4%) Strand=Plus/Minus Query 1579 ATTGCAGAGGAAGATTGTTGGAATCCCTCCATTTATTTGAATTGGTTTGCCGTACTTGCA 1638 |||||| |||| |||| ||| || || || || ||||| ||||| || | || || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1639 GTTGGACTGCCAGTCTCT-CTGGGCCCCCATAAATTCCTTCATATGCTTT----AGATAG 1693 | | |||||| || | || |||||| |||| ||| || |||||| ||| || Sbjct 70558 ATCAGCTTGCCAG-CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAG 70500 Query 1694 -TGCGGGTCG-ACATCATCAATGACGTTGTACCAGGCCTCATTTGAATACACTTTTGGGC 1751 ||| || | || ||||| |||||||| ||||| | |||||| ||| | ||| Sbjct 70499 ATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCTAT 70440 Query 1752 TTAGATCAAGAT-GTCCACAAAGATAATTGTGACGACCCAAACTTCTGGCCCATAATGTT 1810 | | ||| | | | ||| |||| ||||| || ||||||||||||| |||||| || Sbjct 70439 TGAAATCCATAACGCCCATAAAG-TAATTATGTGGACCCAAACTTCTAGCCCATTCAGTC 70381 Query 1811 TTCCCTGTCCTAGATGGACCTTCAATGATAATAGATATCGGCCTA 1855 ||||| |||||||||||||| || || | ||| || |||||| Sbjct 70380 TTCCCAAGTCTAGATGGACCTTCTATAATTAAAGACATGGGCCTA 70336 >seq54129 Length=2260 Score = 104 bits (114), Expect = 4e-19 Identities = 195/281 (69%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 1571 GGCCCAGGATTGCAGAGGAAGATTGTTGGAATCCCTCCATTTATTTGAATTGGTTTGCCG 1630 || ||||||||||| || | ||| |||||||||| || || |||||||||||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1631 TAC-TTGCAGTTGGACTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTCATATGCT---- 1685 ||| ||||| |||| ||| |||| ||| || || | || | | ||||| Sbjct 2200 TACTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTT 2142 Query 1686 --TTAGATAGTGCGGGTCGACATCATCAATGACGTTGTACCAGGCCTCATTTGAATACAC 1743 ||| ||| | ||| |||||| || |||||||| ||||| | |||||||| || Sbjct 2141 AATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA-TG 2083 Query 1744 TTTTGGGCTTAGA--TCAAGATGTCCACAAAGATAATTGTGACGACCCAAACTTCTGGCC 1801 |||||| ||| | ||| | ||| | | || ||||| | | || | ||| Sbjct 2082 TTTTGGAATTAAAATTCATAAATCCCATTATG-TAGTTGTGTTGGCATAATGAACGAGCC 2024 Query 1802 CATAATGTTTTCCCTGTCCTAGATGGACCTTCAATGATAAT 1842 ||| |||||| ||| | || ||||| |||||||| ||||| Sbjct 2023 CATGCTGTTTTTCCTATTCTTGATGGGCCTTCAATAATAAT 1983 >seq953 Length=224861 Score = 104 bits (114), Expect = 4e-19 Identities = 205/296 (69%), Gaps = 12/296 (4%) Strand=Plus/Plus Query 1556 TTATATGATGAAGTAGGCCCAGGATTGCAGAGGAAGATTGTTGGAATCCCTCCATTTATT 1615 ||||| ||| || ||| ||||||||||| | | ||| |||||||||| || || ||| Sbjct 1825 TTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATT 1884 Query 1616 TGAATTGGTTTGCCGTAC-TTGCAGTTGGACTGCCAGTCTCTCTGGGCCCCCATAAATTC 1674 ||||||| ||| |||||| ||||| ||| |||||| | || ||| | || | || | Sbjct 1885 TGAATTGATTTTCCGTACTTTGCA-TTGACCTGCCAATGTCGCTGTACGCCTACGAACT- 1942 Query 1675 CTTCAT-ATGCT------TTAGATAGTGCGGGTCGACATCATCAATGACGTTGTACCAGG 1727 || || || || ||| ||| | ||| ||| || || || ||||| ||||| | Sbjct 1943 GTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATG 2002 Query 1728 CCTCATTTGAATACACTTTTGGGCTTAGATCAAGATGTC-CACAAAGATAATTGTGACGA 1786 | |||||||| ||| ||| | | | ||| | | || || | | || ||||| | Sbjct 2003 CATCATTTGAGTACGTTTTCGAATTAAAATCCATAAATCTCATTATG-TAGTTGTGTGGG 2061 Query 1787 CCCAAACTTCTGGCCCATAATGTTTTCCCTGTCCTAGATGGACCTTCAATGATAAT 1842 || || | |||||| |||||||||| | || |||| |||||||| ||||| Sbjct 2062 CCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGTGCCTTCAATAATAAT 2117 >seq22495 Length=567 Score = 100 bits (110), Expect = 5e-18 Identities = 145/201 (72%), Gaps = 9/201 (4%) Strand=Plus/Minus Query 1556 TTATATGATGAAGTAGGCCCAGGATTGCAGAGGAAGATTGTTGGAATCCCTCCATTTATT 1615 ||||| ||| || ||| ||||||||||| || | ||| || ||||||| | || ||| Sbjct 385 TTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATT 326 Query 1616 TGAATTGGTTTGCCGTAC-TTGCAGTTGGACTGCCAGTCTCTCTGGGCCCCCATAAATTC 1674 |||| |||||| |||||| ||||| |||| |||||||| | ||| || || | || | Sbjct 325 TGAACTGGTTTTCCGTACTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1675 CTTCATATGCT------TTAGATAGTGCGGGTCGACATCATCAATGACGTTGTACCAGGC 1728 | ||||| ||| ||| | ||| || ||||| |||||||| ||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1729 CTCATTTGAATACACTTTTGG 1749 |||||||| ||| |||||| Sbjct 206 ATCATTTGAGTAC-GTTTTGG 187 >seq815 Length=151552 Score = 91.5 bits (100), Expect = 2e-15 Identities = 203/295 (69%), Gaps = 11/295 (4%) Strand=Plus/Minus Query 1556 TTATATGATGAAGTAGGCCCAGGATTGCAGAGGAAGATTGTTGGAATCCCTCCATTTATT 1615 ||||| ||| || ||| ||||||||||| || | || |||||||||| || || ||| Sbjct 85438 TTATAGGAT-AATCAGGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATT 85380 Query 1616 TGAATTGGTTTGCCGTAC-TTGCAGTTGGACTGCCAGTCTCTCTGGGCCCCCATAAATTC 1674 ||| ||||| ||||| ||||| |||| || ||||| | ||| || || | || | Sbjct 85379 TGACCGGGTTTTTCGTACTTTGCA-TTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTA 85321 Query 1675 CT--TCATA-TGCT---TTAGATAGTGCGGGTCGACATCATCAATGACGTTGTACCAGGC 1728 | | ||| | || ||| ||| | | | ||| || || |||||||| ||||| || Sbjct 85320 TTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGC 85261 Query 1729 CTCATTTGAATACACTTTTGGGCTT-AGATCAAGATGTCCACAAAGATAATTGTGACGAC 1787 |||||||| ||| |||||| || | ||| | | ||| | || ||||| | Sbjct 85260 ATCATTTGAGTAC-GTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGC 85202 Query 1788 CCAAACTTCTGGCCCATAATGTTTTCCCTGTCCTAGATGGACCTTCAATGATAAT 1842 | || | |||||| | |||||||| | || ||||| |||||||| ||||| Sbjct 85201 CTAATAAACGAGCCCATGTTATTTTCCCTATTCTTGATGGGCCTTCAATAATAAT 85147 >seq442 Length=237535 Score = 91.5 bits (100), Expect = 2e-15 Identities = 204/296 (69%), Gaps = 14/296 (5%) Strand=Plus/Plus Query 1556 TTATATGATGAAGTAGGCCCAGGATTGCAGAGGAAGATTGTTGGAATCCCTCCATTTATT 1615 ||||| ||| || |||| ||||||||||| || ||| |||||||| | || || ||| Sbjct 22763 TTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATT 22822 Query 1616 TGAATTGGTTTGCCGTAC-TTGCAGTTGGACTGCCAGTCTCTCTGGGCCCCCATAAATTC 1674 |||| || ||| |||||| ||||| |||| |||| ||| || || || || | || | Sbjct 22823 TGAACTGATTTTCCGTACTTTGCA-TTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACT- 22880 Query 1675 CTTCAT-ATGCT------TTAGATAGTGCGGGTCGACATCATCAATGACGTTGTACCAGG 1727 || || ||||| ||| ||| | || ||| || || || ||||| |||| | Sbjct 22881 GTTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TG 22938 Query 1728 CCTCATTTGAATACACTTTTGGGCTTAGATCAAGATGTC-CACAAAGATAATTGTGACGA 1786 | |||||||| ||| ||| | | ||||| | || || | | || ||||| | Sbjct 22939 CATCATTTGAGTACGTTTTCAAATTAAAATCAATAAATCTCATTATG-TAGTTGTGTGGG 22997 Query 1787 CCCAAACTTCTGGCCCATAATGTTTTCCCTGTCCTAGATGGACCTTCAATGATAAT 1842 || || | || ||| |||||||||| | || ||||| |||||||| ||||| Sbjct 22998 CCTAATGAACGAGCTCATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAAT 23053 >seq5745 Length=45059 Score = 89.7 bits (98), Expect = 9e-15 Identities = 209/310 (67%), Gaps = 13/310 (4%) Strand=Plus/Plus Query 1544 TCGAAGAACTCCTTATATGATGAAGTAGG---CCCAGGATTGCAGAGGAAGATTGTTGGA 1600 || |||||| | ||||| ||| || || |||||||||||| | | ||| |||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1601 ATCCCTCCATTTATTTGAATTGGTTTGCCGTAC-TTGCAGTTGGACTGCCAGTCTCTCTG 1659 ||||| || || ||||||| ||||||||||||| ||||| || |||||||| | | || Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCA-TTTGACTGCCAATTGCATTG 43626 Query 1660 GGCCCCCATAAATTCCTTCAT-ATGCT------TTAGATAGTGCGGGTCGACATCATCAA 1712 || || || || | || || ||| | ||| ||| || || ||||||| Sbjct 43627 TGCTCCTATGAACT-GTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAA 43685 Query 1713 TGACGTTGTACCAGGCCTCATTTGAATACACTTTTGGGCTTAGATCAAGATGTCCACAAA 1772 ||||||| ||||| || || || || || ||| | | | ||| | | || | Sbjct 43686 TGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTA 43745 Query 1773 GATAATTGTGACGACCCAAACTTCTGGCCCATAATGTTTTCCCTGTCCTAGATGGACCTT 1832 |||||| || ||||||| | ||||| | |||||| || | ||||| || | | Sbjct 43746 TATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACCGATTCTAGAAGGTCTTG 43805 Query 1833 CAATGATAAT 1842 |||| ||||| Sbjct 43806 CAATAATAAT 43815 >seq30129 Length=3650 Score = 84.2 bits (92), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1544 TCGAAGAACTCCTTATATGATGAAGTAGGCCCAGGATTGCAGAGGAAGATTGTTGGAATC 1603 || |||||| || || ||| || ||| ||||||||||| || | ||| |||||||| Sbjct 2344 TCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2403 Query 1604 CCTCCATTTATTTGAATTGGTTTGCCGTAC-TTGCAGTTGGACTGCCAGTCTCTCTGGGC 1662 || || || ||||||| | |||| |||||| ||||| |||| |||||| | || ||| || Sbjct 2404 CCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCA-TTGGCCTGCCAATTTCGCTGTGC 2462 Query 1663 CCC 1665 || Sbjct 2463 GCC 2465 >seq3059 Length=182465 Score = 84.2 bits (92), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1544 TCGAAGAACTCCTTATATGATGAAGTAGGCCCAGGATTGCAGAGGAAGATTGTTGGAATC 1603 || |||||| |||| ||| || ||| ||||||||||| || | ||| |||||||| Sbjct 20446 TCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20387 Query 1604 CCTCCATTTATTTGAATTGGTTTGCCGT-ACTTGCAGTTGGACTGCCAGTCTCTCTGGGC 1662 || || || |||||||||||||| |||| | ||||| |||| || ||||| | ||| || Sbjct 20386 CCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCA-TTGGCCTACCAGTTGCGCTGTGC 20328 Query 1663 CCC 1665 || Sbjct 20327 GCC 20325 >seq35612 Length=1588 Score = 82.4 bits (90), Expect = 1e-12 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1556 TTATATGATGAAGTAGGCCCAGGATTGCAGAGGAAGATTGTTGGAATCCCTCCATTTATT 1615 ||||| ||| || ||| ||||||||||| || | ||| ||||||| || || || ||| Sbjct 1492 TTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATT 1551 Query 1616 TGAATTGGTTTGCCGTACTTGCAGTTGGACTGCCA 1650 |||| |||||| |||||||| ||||| |||||| Sbjct 1552 TGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 5e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1544 TCGAAGAACTCCTTATATGATGAAGTAGGCCCAGGATTGCAGAGGAAGATTGTTGGAATC 1603 || |||||| ||||| ||| || || ||||||||||| || | ||| |||||||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1604 CCTCCATTTATTTGAATTGGTTTGCCGTACTT 1635 || || || ||||||| |||||| |||||||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8449556003070