Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_009645.1 Length=2731 Score E Sequences producing significant alignments: (Bits) Value seq3439 89.7 9e-15 seq54129 86.0 1e-13 seq3283 84.2 4e-13 seq22495 78.8 2e-11 >seq3439 Length=62978 Score = 89.7 bits (98), Expect = 9e-15 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 1669 GAACATTTTATAAGAGGATCTGGGTCCCGCATTACAGAGAAAGATGGTGGGGATGCCACC 1728 |||| ||||||| || || ||||| ||| || || | ||| | || || || || Sbjct 985 GAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCC 926 Query 1729 TTTAATTTGAGTGGGCTTTCCGTATTTCACGTTGCTTTGCCAGTCCTTTTGCGCGCCCAT 1788 |||||||||| || |||||||| || ||||| ||||| | || ||||| | Sbjct 925 TTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTAC 866 Query 1789 GAATTCTTTGAAATGTTTC------AGATAATGCGGATCGACGTCATCGATTACGTTGTA 1842 ||| | || |||| ||| | ||||| |||| ||| |||||||| ||||| || Sbjct 865 GAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATA 806 Query 1843 CCACGCATCATTTGAATAAACTTTGG 1868 ||| ||||||||||| || ||||| Sbjct 805 CCATGCATCATTTGAGTACGTTTTGG 780 >seq54129 Length=2260 Score = 86.0 bits (94), Expect = 1e-13 Identities = 129/184 (70%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 1691 GGTCCCGCATTACAGAGAAAGATGGTGGGGATGCCACCTTTAATTTGAGTGGGCTTTCCG 1750 ||||| | ||| || || | ||| | || || || |||||||||||| | || |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1751 TATTTCACGTTGCTTTGCCAGTCCTTTTGCGCGCCCATGAATTCTTTGAAATGTTTC--- 1807 || || | ||| || |||| | || ||||| | ||| | || | |||| ||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1808 ---AGATAATGCGGATCGACGTCATCGATTACGTTGTACCACGCATCATTTGAATAAACT 1864 | ||||| |||| ||| || ||||| ||||| ||||| |||||||||| || | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTT 2081 Query 1865 TTGG 1868 |||| Sbjct 2080 TTGG 2077 >seq3283 Length=49157 Score = 84.2 bits (92), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 1669 GAACATTTTATAAGAG-GATCTGGGTCCCGCATTACAGAGAAAGATGGTGGGGATGCCAC 1727 |||| ||||||| || |||| || ||| | ||| || || | ||| | || || || | Sbjct 2305 GAACGTTTTATAGGATTGATCAGG-TCCAGGATTGCAAAGTACGATACTTGGAATCCCGC 2247 Query 1728 CTTTAATTTGAGTGGGCTTTCCGTATTTCACGTTGCTTTGCCAGTCCTTTTGCGCGCCCA 1787 ||||||||||| || || ||||| || | ||| ||||| | || ||||| | Sbjct 2246 CTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTA 2187 Query 1788 TGAATTCTTTGAAATGTTTC------AGATAATGCGGATCGACGTCATCGATTACGTTGT 1841 ||| | || |||| ||| | ||||| |||| |||||| ||||| ||||| | Sbjct 2186 CGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTAT 2127 Query 1842 ACCACGCATCATTTGAATAAACTTTGG 1868 |||| ||||||||||| || ||||| Sbjct 2126 ACCATGCATCATTTGAGTACGTTTTGG 2100 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 136/198 (69%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1691 GGTCCCGCATTACAGAGAAAGATGGTGGGGATGCCACCTTTAATTTGAGTGGGCTTTCCG 1750 ||||| | ||| || || | ||| | | || || | |||||||||| || |||||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1751 TATTTCACGTTGCTTTGCCAGTCCTTTTGCGCGCCCATGAATTCTTTGAAATGTTTC--- 1807 || || | ||| ||||||| || ||||| | ||| | || |||| ||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1808 ---AGATAATGCGGATCGACGTCATCGATTACGTTGTACCACGCATCATTTGAATAAACT 1864 | ||||| |||| || ||||||||| ||||| ||||| ||||||||||| || | Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 191 Query 1865 TTGGCGCTTAGATCCAAA 1882 |||| | | ||||||| Sbjct 190 TTGGAATTAAAATCCAAA 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8622191653530