Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_010238.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq3283 95.1 2e-16 seq4104 91.5 3e-15 seq3439 89.7 9e-15 seq22495 87.8 3e-14 seq77518 82.4 1e-12 seq35612 82.4 1e-12 seq442 82.4 1e-12 seq30129 80.6 5e-12 seq33 80.6 5e-12 seq5745 78.8 2e-11 >seq3283 Length=49157 Score = 95.1 bits (104), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 10/200 (5%) Strand=Plus/Minus Query 1663 ATCCAAGAACACTTTATA--ACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGA 1720 |||||||||| |||||| | || || ||||| |||||||| || | |||| | ||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTG--ATCAGGTCCAGGATTGCAAAGTACGATACTTGGA 2254 Query 1721 ATTCCGCCTTTAATTTGTTCTGGCTTTCCGTACTTTGTATTTGAAAGCCAGTCCCTTTGG 1780 || |||||||||||||| |||| || |||||||||| ||| | |||| | | || Sbjct 2253 ATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGT 2194 Query 1781 GCCCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATG 1834 || || | ||| | || | | |||| ||| || | ||| |||||| || ||| Sbjct 2193 GCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATG 2134 Query 1835 ATATTGTACCAGGCATCATT 1854 | || ||||| |||||||| Sbjct 2133 ACGTTATACCATGCATCATT 2114 >seq4104 Length=64936 Score = 91.5 bits (100), Expect = 3e-15 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1663 ATCCAAGAACACTTTATAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 |||||||||| |||||| ||| |||||| |||||||| || | |||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1723 TCCGCCTTTAATTTGTTCTGGCTTTCCGTACTTTGTAT 1760 |||||||||||||| |||| ||||||||||||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq3439 Length=62978 Score = 89.7 bits (98), Expect = 9e-15 Identities = 142/201 (71%), Gaps = 12/201 (6%) Strand=Plus/Minus Query 1663 ATCCAAGAACACTTTATAACTGGA--ATTG-GGTCCTGGATTGCAGAGGAAGATAGTGGG 1719 ||| |||||| |||||| ||| ||| ||||| ||||||| || | |||| | || Sbjct 991 ATCTAAGAACGTTTTATA---GGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGG 935 Query 1720 AATTCCGCCTTTAATTTGTTCTGGCTTTCCGTACTTTGTATTTGAAAGCCAGTCCCTTTG 1779 ||| |||||||||||||| |||| ||||||||||||| || | | |||| | | || Sbjct 934 AATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTG 875 Query 1780 GGCCCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAAT 1833 || || | ||| | || | | |||| ||| || | ||| ||| ||||| || Sbjct 874 TGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGAT 815 Query 1834 GATATTGTACCAGGCATCATT 1854 || || ||||| |||||||| Sbjct 814 GACGTTATACCATGCATCATT 794 >seq22495 Length=567 Score = 87.8 bits (96), Expect = 3e-14 Identities = 138/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1663 ATCCAAGAACACTTTATAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 ||| ||||| |||||| ||| ||||| |||||||| || | |||| | |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1723 TCCGCCTTTAATTTGTTCTGGCTTTCCGTACTTTGTATTTGAAAGCCAGTCCCTTTGGGC 1782 |||| ||||||||| |||| ||||||||||||| ||| | |||||| | || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1783 CCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGAT 1836 || | ||| | || | | |||| ||| || | ||| || |||||| |||| Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1837 ATTGTACCAGGCATCATT 1854 || ||||| |||||||| Sbjct 218 GTTATACCATGCATCATT 201 >seq77518 Length=14724 Score = 82.4 bits (90), Expect = 1e-12 Identities = 139/201 (69%), Gaps = 9/201 (4%) Strand=Plus/Minus Query 1663 ATCCAAGAACACTTTATAACTGGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1719 ||||||||| |||||||| ||| || || |||||||| || | |||| || Sbjct 2434 ATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGG 2375 Query 1720 AATTCCGCCTTTAATTTGTTCTGGCTTTCCGTACTTTGTATTTGAAAGCCAGTCCCTTTG 1779 ||| |||||||||||||| ||| ||| ||||||||| |||||| | |||| | ||| Sbjct 2374 AATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTG 2315 Query 1780 GGCCCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAAT 1833 || || | ||| | || | | |||| ||| || ||| ||| |||||||| Sbjct 2314 TGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAAT 2255 Query 1834 GATATTGTACCAGGCATCATT 1854 || || ||||| || || || Sbjct 2254 GACGTTATACCACGCGTCGTT 2234 >seq35612 Length=1588 Score = 82.4 bits (90), Expect = 1e-12 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1663 ATCCAAGAACACTTTATAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 ||||||||| |||||| ||| ||||| |||||||| || | |||| | ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1723 TCCGCCTTTAATTTGTTCTGGCTTTCCGTACTTTG 1757 |||||||||||||| |||| ||||||||||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 1573 >seq442 Length=237535 Score = 82.4 bits (90), Expect = 1e-12 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1663 ATCCAAGAACACTTTATAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 ||||||||| |||||| |||| ||||| |||||||| || |||| | ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1723 TCCGCCTTTAATTTGTTCTGGCTTTCCGTACTTTGTATTTGAAAGCCAGTCCCTTTGGGC 1782 ||||||||||||| ||| ||||||||||||| ||| | || ||| | ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1783 CCCCATGAATTCTTTAAAGTGCTTT 1807 || | ||| | || | | |||||| Sbjct 22870 GCCTACGAACTGTTAATAATGCTTT 22894 >seq30129 Length=3650 Score = 80.6 bits (88), Expect = 5e-12 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1663 ATCCAAGAACACTTTATAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 |||||||||| ||| || ||| ||||| |||||||| || | |||| | ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1723 TCCGCCTTTAATTTGTTCTGGCTTTCCGTACTTTGTATT 1761 |||||||||||||| || | ||||||||||||| ||| Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATT 2441 >seq33 Length=454124 Score = 80.6 bits (88), Expect = 5e-12 Identities = 138/200 (69%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 1663 ATCCAAGAACACTTTATAACTGGAATTGGGTCCT--GGATTGCAGAGGAAGATAGTGGGA 1720 ||| |||||| |||||||| | | || || |||||||| || | |||| ||| Sbjct 403335 ATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGA 403276 Query 1721 ATTCCGCCTTTAATTTGTTCTGGCTTTCCGTACTTTGTATTTGAAAGCCAGTCCCTTTGG 1780 || |||| ||||||||| |||| ||||||||||||| |||||| |||||| | || Sbjct 403275 ATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGT 403216 Query 1781 GCCCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATG 1834 | || | ||| | || | | || | ||| || ||| ||||||||||||| Sbjct 403215 ACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATG 403156 Query 1835 ATATTGTACCAGGCATCATT 1854 | || ||||| || || || Sbjct 403155 ACGTTATACCACGCGTCGTT 403136 >seq5745 Length=45059 Score = 78.8 bits (86), Expect = 2e-11 Identities = 138/201 (69%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 1663 ATCCAAGAACACTTTATAACTGGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1719 ||| |||||| |||||||| ||| || || |||||||| | | |||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1720 AATTCCGCCTTTAATTTGTTCTGGCTTTCCGTACTTTGTATTTGAAAGCCAGTCCCTTTG 1779 ||| || ||||||||||| |||| || |||||||||| |||||| |||| | | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1780 GGCCCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAAT 1833 || || ||||| | || | | || | ||| || ||| || ||||||||| Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAAT 43686 Query 1834 GATATTGTACCAGGCATCATT 1854 || || ||||| || || || Sbjct 43687 GACGTTATACCATGCGTCGTT 43707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8702115565780