Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_010313.1 Length=2803 Score E Sequences producing significant alignments: (Bits) Value seq3439 104 4e-19 seq3283 100 5e-18 seq22495 89.7 9e-15 seq5745 86.0 1e-13 seq54129 80.6 5e-12 seq953 80.6 5e-12 >seq3439 Length=62978 Score = 104 bits (114), Expect = 4e-19 Identities = 190/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 1693 TCTAGAAACTCTTTATATGATGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATT 1752 |||| ||| |||||| ||| || || || ||||||| || | |||| | ||||| Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1753 CCACCTTTAATTTGAATGGGCTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCC 1812 || ||||||||||||| || || ||||| || | |||| ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1813 CCCATGAACTCTTTAAAGTGTT------TGAGATAGTGGGGATCGACGTCATCAATGACG 1866 || | ||||| || | | || | | | ||| | ||| ||| ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1867 TTATACCAAGCATCATTTGAATACACCTTTGGACTCAGGTCTAGATGGCCACACAAGTAA 1926 |||||||| ||||||||||| ||| || | | | | || | | || | ||| Sbjct 810 TTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAG 751 Query 1927 TTGTGTGGACCTAATGACCTGGCCCACATTGTCTTGCCT 1965 |||||||| |||||||| | ||||| ||| || ||| Sbjct 750 TTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq3283 Length=49157 Score = 100 bits (110), Expect = 5e-18 Identities = 185/269 (69%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 1704 TTTATATGAT-GATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAA 1762 |||||| ||| ||| || || |||||||| || | |||| | ||||| || ||||||| Sbjct 2299 TTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAA 2241 Query 1763 TTTGAATGGGCTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACT 1822 |||||| || |||||||| || | ||| ||||| | | || || || | ||||| Sbjct 2240 TTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT 2181 Query 1823 CTTTAAAGTGTT------TGAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAG 1876 || | | || | | | ||| | ||| |||||| || |||||||||||||| | Sbjct 2180 GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATG 2121 Query 1877 CATCATTTGAATACACCTTTGGACTCAGGTCTAGATGGCCACACAAGTAATTGTGTGGAC 1936 |||||||||| ||| || | | | | || | | || | ||| |||||||| | Sbjct 2120 CATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGC 2061 Query 1937 CTAATGACCTGGCCCACATTGTCTTGCCT 1965 ||||||| | ||||| ||| || ||| Sbjct 2060 CTAATGAACGAGCCCATGCTGTTTTCCCT 2032 >seq22495 Length=567 Score = 89.7 bits (98), Expect = 9e-15 Identities = 167/246 (68%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 1704 TTTATATGATGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAAT 1763 |||||| ||| | || || |||||||| || | |||| | |||| || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1764 TTGAATGGGCTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTC 1823 ||||| || || ||||| || | ||| ||||||| | || || || | ||||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1824 TTTAAAGTGTTTG------AGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGC 1877 || | | || || | ||| | ||| || |||||| |||||||||||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1878 ATCATTTGAATACACCTTTGGACTCAGGTCTAGATGGCCACACAAGTAATTGTGTGGACC 1937 ||||||||| ||| || | | | | || | | || | ||| |||||||| || Sbjct 206 ATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCC 147 Query 1938 TAATGA 1943 |||||| Sbjct 146 TAATGA 141 >seq5745 Length=45059 Score = 86.0 bits (94), Expect = 1e-13 Identities = 189/282 (67%), Gaps = 11/282 (4%) Strand=Plus/Plus Query 1693 TCTAGAAACTCTTTATATGATGATGTCGGG----CCTGGATTGCAGAGGAAGATAGTGGG 1748 |||| ||| ||||||| ||| | || || || |||||||| | | |||| || Sbjct 43508 TCTAAGAACGCTTTATAAGATAAA-TCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1749 AATTCCACCTTTAATTTGAATGGGCTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTG 1808 ||| |||||||||||||||| || || ||||| || | || ||||| | | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1809 GGCCCCCATGAACTCTTTAAAGTGTT------TGAGATAGTGGGGATCGACGTCATCAAT 1862 || || ||||||| || | | |||| | | ||| ||| || ||||||||| Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAAT 43686 Query 1863 GACGTTATACCAAGCATCATTTGAATACACCTTTGGACTCAGGTCTAGATGGCCACACAA 1922 |||||||||||| || || || || || || | | ||| || | | ||| | Sbjct 43687 GACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTAT 43746 Query 1923 GTAATTGTGTGGACCTAATGACCTGGCCCACATTGTCTTGCC 1964 ||||| |||||||| || || | ||||| | ||| || || Sbjct 43747 ATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 125/176 (71%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1720 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1779 || || |||||||| || | |||| | ||||| || |||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1780 TATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG--TGTT- 1834 || || | ||| || |||| || || || | ||||| || ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1835 -TGAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATA 1889 | | ||| | ||| ||| || || |||||||||||||| |||||||||| || Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 >seq953 Length=224861 Score = 80.6 bits (88), Expect = 5e-12 Identities = 184/271 (68%), Gaps = 12/271 (4%) Strand=Plus/Plus Query 1704 TTTATATGATGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAAT 1763 |||||| ||| | || || |||||||| | | |||| | ||||| || |||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1764 TTGAATGGGCTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTC 1823 |||||| | || ||||| || | ||| ||||| | | || | || | ||||| Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1824 TT--TAA-AGTGTT---TGAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGC 1877 || ||| | | || | | ||| | ||| |||||| || || ||||||||||| || Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1878 ATCATTTGAATACACCTTTGGACTCAGGTC--TAGATGGCCACA-CAAGTAATTGTGTGG 1934 ||||||||| ||| || | | | | || || || | || | ||| |||||||| Sbjct 2004 ATCATTTGAGTACGTTTTCGAATTAAAATCCATAAAT---CTCATTATGTAGTTGTGTGG 2060 Query 1935 ACCTAATGACCTGGCCCACATTGTCTTGCCT 1965 |||||||| | ||||| ||| || ||| Sbjct 2061 GCCTAATGAACGAGCCCATGCTGTTTTCCCT 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8848927786800