Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_010440.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq3283 125 1e-25 seq3439 120 5e-24 seq22495 98.7 2e-17 seq953 91.5 3e-15 seq77518 87.8 3e-14 seq33 87.8 3e-14 seq5745 86.0 1e-13 seq815 84.2 4e-13 seq54129 82.4 1e-12 >seq3283 Length=49157 Score = 125 bits (138), Expect = 1e-25 Identities = 230/333 (69%), Gaps = 10/333 (3%) Strand=Plus/Minus Query 1602 GAATTCTGCATTCTTTAGTGCCCAATCTTTTAATGCTGAATTTTTATTTTCGTCCAAGTA 1661 |||||||||||| | ||| | |||| ||| | |||||| | |||||| | Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 2303 Query 1662 CTCTTTATATGAT-GATGTTGGTCCCGGATTGCAGAGGAAGATAGTGGGAATTCCACCTT 1720 | |||||| ||| ||| ||||| |||||||| || | |||| | ||||| || |||| Sbjct 2302 CGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTT 2244 Query 1721 TAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGA 1780 ||||||||| || ||||||||||| | ||| ||||| | | || || || | || Sbjct 2243 TAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGA 2184 Query 1781 ATTCTTTAAAATGCT------TTAGATAGTGGGGGTSGACGTCATCAATGACGTTGTACC 1834 | | || | |||||| ||| ||| | || |||||| || |||||||| |||| Sbjct 2183 ACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACC 2124 Query 1835 AAGCATCATTACTGTAGACCTTTGGACTT-AAGTCCAGATGTCCACATAAGTAATTGTGT 1893 | |||||||| ||| |||||| || || |||| | ||| || ||| |||||| Sbjct 2123 ATGCATCATTTGAGTA-CGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGT 2065 Query 1894 GGACCCAGTGACCTAGCCCACATCGTCTTCCCT 1926 || || | ||| | |||||| || |||||| Sbjct 2064 GGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 2032 >seq3439 Length=62978 Score = 120 bits (132), Expect = 5e-24 Identities = 226/331 (68%), Gaps = 8/331 (2%) Strand=Plus/Minus Query 1603 AATTCTGCATTCTTTAGTGCCCAATCTTTTAATGCTGAATTTTTATTTTCGTCCAAGTAC 1662 ||||||||||| | ||| | |||| ||| | |||||| | || ||| || Sbjct 1041 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAAC 982 Query 1663 TCTTTATATGATGATGTTGGTCCCGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTA 1722 |||||| ||| || ||||| ||||||| || | |||| | ||||| || |||||| Sbjct 981 GTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTA 922 Query 1723 ATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAAT 1782 ||||||| || || |||||||| | |||| ||||| | | || || || | ||| Sbjct 921 ATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAAC 862 Query 1783 TCTTTAAAATGCT------TTAGATAGTGGGGGTSGACGTCATCAATGACGTTGTACCAA 1836 | || | |||||| ||| ||| | || ||| ||||| |||||||| ||||| Sbjct 861 TGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCAT 802 Query 1837 GCATCATTACTGTAGACCTTTGGACTT-AAGTCCAGATGTCCACATAAGTAATTGTGTGG 1895 |||||||| ||| |||||| || || |||| | ||| || ||| |||||||| Sbjct 801 GCATCATTTGAGTA-CGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGG 743 Query 1896 ACCCAGTGACCTAGCCCACATCGTCTTCCCT 1926 || | ||| | |||||| || |||||| Sbjct 742 GCCTAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 171/247 (69%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 1665 TTTATATGATGATGTTGGTCCCGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAAT 1724 |||||| ||| | ||||| |||||||| || | |||| | |||| || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1725 TTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1784 ||||| || || |||||||| | ||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1785 TTTAAAATGCT------TTAGATAGTGGGGGTSGACGTCATCAATGACGTTGTACCAAGC 1838 || | |||||| ||| ||| | || || |||||| |||||||| ||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1839 ATCATTACTGTAGACCTTTGGACTT-AAGTCCAGATGTCCACATAAGTAATTGTGTGGAC 1897 |||||| ||| |||||| || || |||| | ||| || ||| |||||||| | Sbjct 206 ATCATTTGAGTA-CGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGC 148 Query 1898 CCAGTGA 1904 | | ||| Sbjct 147 CTAATGA 141 >seq953 Length=224861 Score = 91.5 bits (100), Expect = 3e-15 Identities = 218/331 (66%), Gaps = 6/331 (2%) Strand=Plus/Plus Query 1602 GAATTCTGCATTCTTTAGTGCCCAATCTTTTAATGCTGAATTTTTATTTTCGTCCAAGTA 1661 |||||||||||| | || | |||| ||| | |||||| || | || ||| | Sbjct 1761 GAATTCTGCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGAATCTAAATCTAAGAA 1820 Query 1662 CTCTTTATATGATGATGTTGGTCCCGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTT 1721 |||||| ||| | ||||| |||||||| | | |||| | ||||| || ||||| Sbjct 1821 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTT 1880 Query 1722 AATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1781 ||||||||| | || |||||||| | ||| ||||| | | || | || | ||| Sbjct 1881 AATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAA 1940 Query 1782 TTCTTTAAAATGCT------TTAGATAGTGGGGGTSGACGTCATCAATGACGTTGTACCA 1835 | || | ||| || ||| ||| | || |||||| || || ||||| ||||| Sbjct 1941 CTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCA 2000 Query 1836 AGCATCATTACTGTAGACCTTTGGACTTAAGTCCAGATGTCCACATAAGTAATTGTGTGG 1895 |||||||| ||| || | | | || |||| | || || ||| |||||||| Sbjct 2001 TGCATCATTTGAGTACGTTTTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGG 2060 Query 1896 ACCCAGTGACCTAGCCCACATCGTCTTCCCT 1926 || | ||| | |||||| || |||||| Sbjct 2061 GCCTAATGAACGAGCCCATGCTGTTTTCCCT 2091 >seq77518 Length=14724 Score = 87.8 bits (96), Expect = 3e-14 Identities = 173/254 (68%), Gaps = 13/254 (5%) Strand=Plus/Minus Query 1602 GAATTCTGCATTCTTTAGTGCCCAATCTTTTAATGCTGAATTTTTATTTTCGTCCAAGTA 1661 |||||||||||| | || | ||| |||| | ||||||| || | |||||| | Sbjct 2485 GAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAAATCCAAGAA 2426 Query 1662 CTCTTTATATGATGATGTTGGTCCC---GGATTGCAGAGGAAGATAGTGGGAATTCCACC 1718 ||||||| ||| | ||| ||| |||||||| || | |||| ||||| || || Sbjct 2425 TGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCC 2366 Query 1719 TTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1778 ||||||||||| | || ||||||| | || || |||| | ||| || || | Sbjct 2365 TTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTAC 2306 Query 1779 GAATTCTTTAAAATGCT------TTAGATA--GTGGGGGTSGACGTCATCAATGACGTTG 1830 ||| | || | |||||| ||| ||| ||| || ||| |||||||||||||| Sbjct 2305 GAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGG--GACATCATCAATGACGTTA 2248 Query 1831 TACCAAGCATCATT 1844 ||||| || || || Sbjct 2247 TACCACGCGTCGTT 2234 >seq33 Length=454124 Score = 87.8 bits (96), Expect = 3e-14 Identities = 214/322 (66%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 1602 GAATTCTGCATTCTTTAGTGCCCAATCTTTTAATGCTGAATTTTTATTTTCGTCCAAGTA 1661 |||||||||||||| || | ||| ||| | ||||||| || | || ||| | Sbjct 403386 GAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTATATCGAAGAA 403327 Query 1662 CTCTTTATATGATGATGTTGGTCCC--GGATTGCAGAGGAAGATAGTGGGAATTCCACCT 1719 | ||||||| || | ||| ||| |||||||| || | |||| ||||| || | | Sbjct 403326 CGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTT 403267 Query 1720 TTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATG 1779 |||||||||| || || |||||||| | || ||||||| | || | || | | Sbjct 403266 TTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACG 403207 Query 1780 AATTCTTTAAAATGCT------TTAGATA--GTGGGGGTSGACGTCATCAATGACGTTGT 1831 || | || | |||| | ||| ||| ||| || |||||||||||||||||| | Sbjct 403206 AACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTAT 403149 Query 1832 ACCAAGCATCATTACTGTAGACCTTTGGACTTAAGTCCAGATGTCCACATAAGTAATTGT 1891 |||| || || || ||| | | | | || |||| | || || |||||| | Sbjct 403148 ACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTATGTAATTAT 403089 Query 1892 GTGGACCCAGTGACCTAGCCCA 1913 ||||||||| || | ||||| Sbjct 403088 GTGGACCCAACGAACGTGCCCA 403067 >seq5745 Length=45059 Score = 86.0 bits (94), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 13/218 (6%) Strand=Plus/Plus Query 1638 TGAATTTTTATTTTCGTCCAAGTACTCTTTATATGATGATGTTGGTCCC---GGATTGCA 1694 ||||||| || | || ||| || ||||||| ||| | ||| ||| |||||||| Sbjct 43492 TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCA 43551 Query 1695 GAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCT 1754 | | |||| ||||| |||||||||||||||| || || |||||||| | || Sbjct 43552 AATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGA 43611 Query 1755 TTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCT------TTAGATA--GTGG 1806 ||||| | | ||| || || ||||| | || | |||| | ||| ||| ||| Sbjct 43612 CTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGG 43671 Query 1807 GGGTSGACGTCATCAATGACGTTGTACCAAGCATCATT 1844 || || ||||||||||||||| ||||| || || || Sbjct 43672 AGG--GATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq815 Length=151552 Score = 84.2 bits (92), Expect = 4e-13 Identities = 220/332 (66%), Gaps = 9/332 (3%) Strand=Plus/Minus Query 1602 GAATTCTGCATTCTTTAGTGCCCAATCTTTTAATGCTGAATTTTTATTTTCGTCCAAGTA 1661 ||||||| |||| | ||| | |||| ||| | ||||||| | | ||| | Sbjct 85502 GAATTCTACATTTTGTAGAGTCCAAGTTTTCCAATATGAATTTGACTCCAAATTCAATAA 85443 Query 1662 CTCTTTATATGATGATGTTGGTCCCGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTT 1721 | |||||| ||| || ||||| |||||||| || | ||| | ||||| || ||||| Sbjct 85442 CGTTTTATAGGATAATCA-GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTT 85384 Query 1722 AATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1781 ||||||| ||| || ||||||| | ||| | ||||| | || || || | ||| Sbjct 85383 AATTTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAA 85324 Query 1782 TTCTTTAAAATGCT------TTAGATAGTGGGGGTSGACGTCATCAATGACGTTGTACCA 1835 | || | ||| || ||| ||| | | |||||| || |||||||| ||||| Sbjct 85323 CTATTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCA 85264 Query 1836 AGCATCATTACTGTAGACCTTTGGACTT-AAGTCCAGATGTCCACATAAGTAATTGTGTG 1894 |||||||| ||| |||||| || || |||| | ||| || ||| ||||||| Sbjct 85263 TGCATCATTTGAGTA-CGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTG 85205 Query 1895 GACCCAGTGACCTAGCCCACATCGTCTTCCCT 1926 || | | | | |||||| | | |||||| Sbjct 85204 TGCCTAATAAACGAGCCCATGTTATTTTCCCT 85173 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 163/240 (68%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 1681 GGTCCCGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1740 ||||| |||||||| || | |||| | ||||| || |||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1741 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCT----- 1795 ||||| | ||| || |||| || || || | ||| | || |||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1796 -TTAGATAGTGGGGGTSGACGTCATCAATGACGTTGTACCAAGCATCATTACTGTAGACC 1854 ||| ||| | || ||| || || |||||||| ||||| ||||||| ||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA-TGT 2082 Query 1855 TTTGGACTT-AAGTCCAGATGTCCACATAAGTAATTGTGTGGACCCAGTGACCTAGCCCA 1913 |||||| || || | || | ||| || ||| |||||| | | | ||| | |||||| Sbjct 2081 TTTGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCA 2022 Lambda K H 0.635 0.409 0.915 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8718100348230