Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_010441.2 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq3439 98.7 2e-17 seq3283 98.7 2e-17 seq22495 82.4 1e-12 seq54129 78.8 2e-11 >seq3439 Length=62978 Score = 98.7 bits (108), Expect = 2e-17 Identities = 224/332 (67%), Gaps = 10/332 (3%) Strand=Plus/Minus Query 1605 AATTCTGCATTCTTTAGTGCCCA-GTCTTTGAGTGCAGAATTTTTATCCTCATCTAGGTA 1663 ||||||||||| | ||| | ||| || || | | ||||| ||| ||||| | | Sbjct 1041 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATAT-GAATTGGACTCCAAATCTAAGAA 983 Query 1664 CTCTTTATACGACGACGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTT 1723 | |||||| || | ||||| ||||||| || | |||| | ||||| || ||||| Sbjct 982 CGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 923 Query 1724 AATTTGAATGGGCTTCCCGTATTTCGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAA 1783 |||||||| || || ||||| || | |||| ||||| | | ||| || || | ||| Sbjct 922 AATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAA 863 Query 1784 TTCTTTAAAGTGCT------TTAGATAGTGGGGGTCGACGTCATCGATGACGTTGTACCA 1837 | || | | |||| ||| ||| | || ||| |||||||||||||| ||||| Sbjct 862 CTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCA 803 Query 1838 AACATTATTACTGTAGACCTTTGGACTT-AAGTCCAGATGTCCACATAAATAATTGTGTG 1896 ||| ||| ||| |||||| || || |||| | ||| || || ||||||| Sbjct 802 TGCATCATTTGAGTA-CGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTG 744 Query 1897 GACCCAGTGACCTAGCCCACATCGTCTTCCCT 1928 | || | ||| | |||||| || |||||| Sbjct 743 GGCCTAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq3283 Length=49157 Score = 98.7 bits (108), Expect = 2e-17 Identities = 175/253 (69%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 1683 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1742 ||||| |||||||| || | |||| | ||||| || ||||||||||||| || |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1743 TATTTCGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1797 || || | ||| ||||| | | ||| || || | ||| | || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1798 -TTAGATAGTGGGGGTCGACGTCATCGATGACGTTGTACCAAACATTATTACTGTAGACC 1856 ||| ||| | || |||||| ||||||||||| ||||| ||| ||| ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTA-CGT 2105 Query 1857 TTTGGACTT-AAGTCCAGATGTCCACATAAATAATTGTGTGGACCCAGTGACCTAGCCCA 1915 |||||| || || |||| | ||| || || |||||||| || | ||| | |||||| Sbjct 2104 TTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 Query 1916 CATCGTCTTCCCT 1928 || |||||| Sbjct 2044 TGCTGTTTTCCCT 2032 >seq22495 Length=567 Score = 82.4 bits (90), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 1683 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1742 ||||| |||||||| || | |||| | |||| || | ||||||||||| || || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1743 TATTTCGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1797 || || | ||| ||||||| | ||| || || | ||| | || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1798 -TTAGATAGTGGGGGTCGACGTCATCGATGACGTTGTACCAAACATTATTACTGTAGACC 1856 ||| ||| | || || ||||||||||||||| ||||| ||| ||| ||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTA-CGT 192 Query 1857 TTTGGACTT-AAGTCCAGATGTCCACATAAATAATTGTGTGGACCCAGTGA 1906 |||||| || || |||| | ||| || || |||||||| || | ||| Sbjct 191 TTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 119/170 (70%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1683 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1742 ||||| |||||||| || | |||| | ||||| || |||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1743 TATTTCGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1797 || || | ||| || |||| ||| || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1798 -TTAGATAGTGGGGGTCGACGTCATCGATGACGTTGTACCAAACATTATT 1846 ||| ||| | || ||| || ||||||||||| ||||| |||| ||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8682933826840