Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_010618.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq3283 116 6e-23 seq3439 111 3e-21 seq22495 109 1e-20 seq54129 96.9 6e-17 seq5745 96.9 6e-17 seq953 93.3 7e-16 seq80468 87.8 3e-14 seq35612 87.8 3e-14 seq4104 87.8 3e-14 seq442 86.0 1e-13 seq490 84.2 4e-13 seq77518 80.6 5e-12 seq3059 80.6 5e-12 seq20728 78.8 2e-11 seq30129 77.0 6e-11 >seq3283 Length=49157 Score = 116 bits (128), Expect = 6e-23 Identities = 182/259 (70%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 1677 GGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAATTTGAATTGGCTTCCCG 1736 ||||| ||||||||||| | |||| ||||||| || ||||||||||||| ||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1737 TACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1791 ||||||| ||| ||||| | | || || || | ||| | | | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1792 -TTAGGTAGTGGGGATCGACGTCATCAATGACGTTATACCATGCATCATTCCTGTATACC 1850 ||| || | ||| |||||| || ||||||||||||||||||||||| || ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACG 2106 Query 1851 TTT--GGACTGAGATCCAAATGTCCGCACAGATAATTATGTAGTCCTAATGACCTGGCCC 1908 ||| | | | | ||||| | ||| | || || ||| | |||||||| | |||| Sbjct 2105 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1909 ACATAGTCTTCCCCGTTCT 1927 | || ||||| |||| Sbjct 2045 ATGCTGTTTTCCCTATTCT 2027 >seq3439 Length=62978 Score = 111 bits (122), Expect = 3e-21 Identities = 181/259 (70%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 1677 GGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAATTTGAATTGGCTTCCCG 1736 ||||| |||||||||| | |||| ||||||| || ||||||||||||| ||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1737 TACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1791 ||||||| |||| ||||| | | || || || | ||| | | | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1792 -TTAGGTAGTGGGGATCGACGTCATCAATGACGTTATACCATGCATCATTCCTGTATACC 1850 ||| || | ||| ||| ||||| ||||||||||||||||||||||| || ||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT--TGAGTACG 786 Query 1851 TTT--GGACTGAGATCCAAATGTCCGCACAGATAATTATGTAGTCCTAATGACCTGGCCC 1908 ||| | | | | ||||| | ||| | || || ||| | |||||||| | |||| Sbjct 785 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 726 Query 1909 ACATAGTCTTCCCCGTTCT 1927 | || ||||| |||| Sbjct 725 ATGCTGTTTTCCCTATTCT 707 >seq22495 Length=567 Score = 109 bits (120), Expect = 1e-20 Identities = 174/248 (70%), Gaps = 10/248 (4%) Strand=Plus/Minus Query 1661 TTTATAGCTGGAATTGGGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAAT 1720 ||||||| ||| ||||| ||||||||||| | |||| || |||| || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1721 TTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1780 ||||| ||| || |||||||||| ||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1781 CTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGACGTTATACCATGC 1834 | | | |||| ||| || | ||| || |||||| ||||||||||||||||| Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1835 ATCATTCCTGTATACCTTT--GGACTGAGATCCAAATGTCCGCACAGATAATTATGTAGT 1892 |||||| || ||| ||| | | | | ||||||| ||| | || || ||| | Sbjct 206 ATCATT--TGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGG 149 Query 1893 CCTAATGA 1900 |||||||| Sbjct 148 CCTAATGA 141 >seq54129 Length=2260 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1677 GGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAATTTGAATTGGCTTCCCG 1736 ||||| ||||||||||| | |||| ||||||| || ||||||||||||||||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1737 TACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1791 ||||||| ||| || |||| || || || | ||| | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1792 -TTAGGTAGTGGGGATCGACGTCATCAATGACGTTATACCATGCATCATT 1840 ||| || | ||| ||| || || ||||||||||||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq5745 Length=45059 Score = 96.9 bits (106), Expect = 6e-17 Identities = 174/255 (68%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 1680 CCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAATTTGAATTGGCTTCCCGTAC 1739 || |||||||||| | |||| |||||| |||||||||||||||| ||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1740 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1793 |||| || ||||| | | ||| || || ||||| | | | | || | || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1794 AGGTAGTGGGGATCGACGTCATCAATGACGTTATACCATGCATCATTCCTGTATACCTTT 1853 | || ||| || |||||||||||||||||||||||| || ||| ||| || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1854 GGACTGAGATCCAAATGTCCGCACAGATAATTATGTAGTCCTAATGACCTGGCCCACATA 1913 | | | | ||||| | || | |||||||||| | || || || | ||||| | Sbjct 43721 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACT 43780 Query 1914 GTCTTCCCCGTTCTA 1928 || || || ||||| Sbjct 43781 GTTTTACCGATTCTA 43795 >seq953 Length=224861 Score = 93.3 bits (102), Expect = 7e-16 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 1661 TTTATAGCTGGAATTGGGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAAT 1720 ||||||| ||| ||||| |||||||||| | |||| ||||||| || |||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1721 TTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1780 |||||||| || |||||||||| ||| ||||| | | || | || | ||| | Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1781 CTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGACGTTATACCATGC 1834 | | | | || ||| || | ||| |||||| || || |||||||||||||| Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1835 ATCATT 1840 |||||| Sbjct 2004 ATCATT 2009 >seq80468 Length=4946 Score = 87.8 bits (96), Expect = 3e-14 Identities = 173/252 (69%), Gaps = 13/252 (5%) Strand=Plus/Plus Query 1598 GAATTGTGCATTTTTTAAAGCCCAATCTTTGAGTGCGGAATTCTTTTCC-TCTTCTAGAT 1656 ||||| |||||||| ||||| |||| ||| ||||| ||| | ||| ||| Sbjct 4187 GAATTCTGCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCATATTCAAGAA 4246 Query 1657 ACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTT 1716 | ||||||| ||| ||||| |||||||||| | |||| |||||||||| |||| Sbjct 4247 TGT-TTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCCGCCTT 4305 Query 1717 TAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCA--GTCCCTTTGGGCCCCCAT 1774 |||| |||| || || ||||||||||| ||| | ||| || | || || || | Sbjct 4306 TAATCTGAACAGGTTTTCCGTACTTTGTATTGGCCTACCATTGTGC---TGTGCGCCTAC 4362 Query 1775 GAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGACGTTATA 1828 ||| | | | | |||| ||| || | | | |||||| | ||||||||||| Sbjct 4363 GAACTGTTGATAATGCTTCTTAATTAAATAATTTGAAGGGACGTCGTTGATGACGTTATA 4422 Query 1829 CCATGCATCATT 1840 |||||||| ||| Sbjct 4423 CCATGCATAATT 4434 >seq35612 Length=1588 Score = 87.8 bits (96), Expect = 3e-14 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1661 TTTATAGCTGGAATTGGGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAAT 1720 ||||||| ||| ||||| ||||||||||| | |||| ||||||| || |||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1721 TTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCA 1756 ||||| ||| || |||||||||| |||| ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 87.8 bits (96), Expect = 3e-14 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 1661 TTTATAGCTGGAATTGGGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAAT 1720 ||||||| ||| |||||| ||||||||||| | |||| ||||||| || |||||||| Sbjct 20846 TTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 20787 Query 1721 TTGAATTGGCTTCCCGTACTTTG 1743 ||||| ||| || |||||||||| Sbjct 20786 TTGAACTGGTTTTCCGTACTTTG 20764 >seq442 Length=237535 Score = 86.0 bits (94), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 1661 TTTATAGCTGGAATTGGGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAAT 1720 ||||||| |||| ||||| ||||||||||| |||| ||||||| | |||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1721 TTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1780 ||||| || || |||||||||| ||| ||| ||| | ||| || || | ||| | Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTG 22881 Query 1781 CTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGACGTTATACCATGC 1834 | | | |||| ||| || | | | |||||| || || |||||||||| ||| Sbjct 22882 TTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TGC 22939 Query 1835 ATCATT 1840 |||||| Sbjct 22940 ATCATT 22945 >seq490 Length=137872 Score = 84.2 bits (92), Expect = 4e-13 Identities = 171/247 (69%), Gaps = 14/247 (6%) Strand=Plus/Minus Query 1685 ATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAATTTGAATTGGCTTCCCGTACTTTGT 1744 |||||| |||| || | ||| ||||||||||||||||| |||||||| | || |||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1745 GTTGCTTTGCCAGTCCCTTTG---GGCCCCCATGAATTCCTTAAAGTGCTT----TAGGT 1797 | ||||||| || || |||||| || | ||| | | ||||| || Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1798 AG-TG-GGGATCGACGTCATCAATGACGTTATACCATGCATCATTCCTGTATACCTTTGG 1855 || || ||| ||||||||| |||||||||||||||| ||||| || |||| Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCT 70442 Query 1856 ACTGAGATCCA-AATGTCCGCACAGATAATTATGTAGTCCTAATGACCTGGCCCACATAG 1914 | ||| ||||| || | || | || ||||||||| | || || || ||||| || Sbjct 70441 ATTGAAATCCATAACGCCCATAAAG-TAATTATGTGGACCCAAACTTCTAGCCCATTCAG 70383 Query 1915 TCTTCCC 1921 ||||||| Sbjct 70382 TCTTCCC 70376 >seq77518 Length=14724 Score = 80.6 bits (88), Expect = 5e-12 Identities = 122/174 (70%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 1680 CCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAATTTGAATTGGCTTCCCGTAC 1739 || ||||||||||| | |||| |||||| || ||||||||||||| || || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1740 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1793 |||| || || |||| | ||| || || | ||| | | | | |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1794 AGGTAGTGGGGATCGACGTCATCAATGACGTTATACCATGCATCATTCCTGTAT 1847 | || ||| ||| |||||||||||||||||||| || || ||| |||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTAT 2227 >seq3059 Length=182465 Score = 80.6 bits (88), Expect = 5e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1677 GGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAATTTGAATTGGCTTCCCG 1736 ||||| ||||||||||| | |||| ||||||| || ||||||||||||||||| || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1737 TACTTTG 1743 || |||| Sbjct 20359 TAATTTG 20353 >seq20728 Length=3653 Score = 78.8 bits (86), Expect = 2e-11 Identities = 105/145 (72%), Gaps = 7/145 (5%) Strand=Plus/Plus Query 1702 TTGGAATTCCACCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCC 1761 ||||||| || ||||||||||||| ||| || |||||||||| ||| |||| || | Sbjct 1440 TTGGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGC 1498 Query 1762 TTTGGGCCCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCAT 1815 || || || | ||| | | | | |||| ||| || | ||| |||||||| Sbjct 1499 GCTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCAT 1558 Query 1816 CAATGACGTTATACCATGCATCATT 1840 | ||||||||||| ||||||||||| Sbjct 1559 CGATGACGTTATATCATGCATCATT 1583 >seq30129 Length=3650 Score = 77.0 bits (84), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1677 GGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAATTTGAATTGGCTTCCCG 1736 ||||| ||||||||||| | |||| ||||||| || ||||||||||||| | | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1737 TACTTTGTGTTGCTTTGCCA 1756 ||||||| ||| ||||| Sbjct 2431 TACTTTGCATTGGCCTGCCA 2450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8673342957370