Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_010647.1 Length=2630 Score E Sequences producing significant alignments: (Bits) Value seq5745 127 3e-26 seq33 116 6e-23 seq3283 105 1e-19 seq1993 105 1e-19 seq77518 104 4e-19 seq3439 102 1e-18 seq22495 89.7 9e-15 seq20728 84.2 4e-13 seq5493 84.2 4e-13 seq953 82.4 1e-12 seq442 80.6 4e-12 seq4295 78.8 2e-11 seq815 78.8 2e-11 >seq5745 Length=45059 Score = 127 bits (140), Expect = 3e-26 Identities = 187/260 (72%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 1563 CCAGGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA- 1621 ||||||||||| | |||||| | || || || |||||||||||||| || || || || Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1622 TTTACAGTTTGACTGCCAGTCCCTTTGAGCCCCAATTAACTCTTTCCAATG--CTTTAAT 1679 ||| || ||||||||||| | | ||| || || || |||| || |||| |||||| Sbjct 43601 TTTGCA-TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1680 TTCAAATAATTGGGGCTTATGTCATCAATGACGTTGTACTCAGCGGCATTGGAATAGACA 1739 | |||||| || ||||||||||||||||| ||| ||| | || || || Sbjct 43660 T--AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1740 CGCGAATTGAAGTCGAGGTGACCCATGAGATAATTGTGTGGTCCCAATGAACGAGCCCAC 1799 |||||| || || | ||||| | |||||| ||||| ||||| ||||| ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAA 43777 Query 1800 ATTGTTTTGCCTGTTCTTGA 1819 | |||||| || |||| || Sbjct 43778 ACTGTTTTACCGATTCTAGA 43797 >seq33 Length=454124 Score = 116 bits (128), Expect = 6e-23 Identities = 203/288 (70%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 1527 TCTTTACCGAGGAAGTCTTTATAACTGGCACC-CT---CACCAGGATTGCACAGCACGAT 1582 ||| || ||| ||| |||||||| | || | || | ||||||||||| |||||||| Sbjct 403340 TCTATATCGAAGAACGCTTTATAA--GACAACTCTGGACCCCAGGATTGCAAAGCACGAT 403283 Query 1583 TGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA-TTTACAGTTTGACTGCCAGT 1641 | || || || | |||||||||||| || ||||| || ||| || ||||||||||||| Sbjct 403282 ACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCA-TTTGACTGCCAGT 403224 Query 1642 CCCTTTGAGCCCCAATTAACTCTTTCCAATG--CTTTAATTTCAAATAATTGGGGCTTAT 1699 | || | || | |||| || |||| ||||||| |||||| || | Sbjct 403223 TGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT--AAATAAGCTGGAGGGAC 403166 Query 1700 GTCATCAATGACGTTGTACTCAGCGGCATTGGAATAGACACGCGAATTGAAGTCGAGGTG 1759 ||||||||||||||| ||| ||| | || || || | |||||| || || | Sbjct 403165 GTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAA 403106 Query 1760 ACCCATGAGATAATTGTGTGGTCCCAATGAACGAGCCCACATTGTTTT 1807 ||||| | ||||| ||||| ||||| ||||| ||||| | |||||| Sbjct 403105 GCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTT 403058 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 182/260 (70%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 1563 CCAGGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA- 1621 ||||||||||| || ||||| || || || |||||||||||||| || || || || Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1622 TTTACAGTTTGACTGCCAGTCCCTTTGAGCCCCAATTAACTCTTTCCAATGCT--TTAAT 1679 ||| || || | |||||| | | || || || | |||| || |||||| ||||| Sbjct 2220 TTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1680 TTCAAATAATTGGGGCTTATGTCATCAATGACGTTGTACTCAGCGGCATTGGAATAGACA 1739 | |||||||| || | ||| || |||||||| ||| || |||| || || Sbjct 2161 T--AAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1740 CGCGAATTGAAGTCGAGGTGACCCATGAGATAATTGTGTGGTCCCAATGAACGAGCCCAC 1799 ||||| || || | ||||| | || |||||||| || |||||||||||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1800 ATTGTTTTGCCTGTTCTTGA 1819 |||||| ||| ||||||| Sbjct 2043 GCTGTTTTCCCTATTCTTGA 2024 >seq1993 Length=81530 Score = 105 bits (116), Expect = 1e-19 Identities = 184/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 1560 TCACCAGGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCA 1619 || ||||||||||| |||||||| | || || || ||||||||||||| || || || Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1620 TA-TTTACAGTTTGACTGCCAGTCCCTTTGAGCCCCAATTAACTCTTTCCAATGCTTT-- 1676 || ||| || ||||||||||| | | ||| || | | |||| || |||| ||| Sbjct 74346 TACTTTGCA-TTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1677 AATTTCAAATAATTGGGGCTTATGTCATCAATGACGTTGTACTCAGCGGCATTGGAATAG 1736 |||| |||||| || | ||||||||||||||| ||| ||| || || || Sbjct 74287 AATT--AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTAT 74230 Query 1737 ACACGCGAATTGAAGTCGAGGTGACCCATGAGATAATTGTGTGGTCCCAATGAACGAGCC 1796 |||||| || || | ||||| | |||||| ||||| ||||| ||||| | | Sbjct 74229 GTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTC 74170 Query 1797 CACATTGTTTTGCCTGTTCTTGA 1819 || | |||||| || |||| || Sbjct 74169 CAAACTGTTTTACCGATTCTAGA 74147 >seq77518 Length=14724 Score = 104 bits (114), Expect = 4e-19 Identities = 180/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 1563 CCAGGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA- 1621 ||||||||||| || ||||| | || || || |||||||||||||| | ||| | || Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1622 TTTACAGTTTGACTGCCAGTCCCTTTGAGCCCCAATTAACTCTTTCCAATGCTTT--AAT 1679 ||| || |||||||| |||| | ||| || || | |||| || |||||||| ||| Sbjct 2340 TTTGCA-TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1680 TTCAAATAATTGGGGCTTATGTCATCAATGACGTTGTACTCAGCGGCATTGGAATAGACA 1739 | |||||| || | |||||||||||||| ||| ||| | || || || Sbjct 2281 T--AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 2224 Query 1740 CGCGAATTGAAGTCGAGGTGACCCATGAGATAATTGTGTGGTCCCAATGAACGAGCCCAC 1799 | |||| || || | ||||| | |||||| ||||| ||||| |||| ||||| Sbjct 2223 TTCAAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAA 2164 Query 1800 ATTGTTTTGCCTGTTCT 1816 | |||||| || |||| Sbjct 2163 ACTGTTTTACCGATTCT 2147 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 179/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 1563 CCAGGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCATAT 1622 ||| ||||||| || ||||| || || || |||||||||||||| || ||||| || Sbjct 960 CCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTAC 901 Query 1623 TTACAGTTTGACTGCCAGTCCCTTTGAGCCCCAATTAACTCTTTCCAATGCT--TTAATT 1680 || ||| | ||||| | | || || || | |||| || |||||| |||||| Sbjct 900 TTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 841 Query 1681 TCAAATAATTGGGGCTTATGTCATCAATGACGTTGTACTCAGCGGCATTGGAATAGACAC 1740 |||||||| || | ||||| |||||||| ||| || |||| || || Sbjct 840 --AAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTT 783 Query 1741 GCGAATTGAAGTCGAGGTGACCCATGAGATAATTGTGTGGTCCCAATGAACGAGCCCACA 1800 ||||| || || | ||||| | || |||||||| || |||||||||||||| Sbjct 782 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 723 Query 1801 TTGTTTTGCCTGTTCTTGA 1819 |||||| ||| ||||||| Sbjct 722 CTGTTTTCCCTATTCTTGA 704 >seq22495 Length=567 Score = 89.7 bits (98), Expect = 9e-15 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 1563 CCAGGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA- 1621 ||||||||||| || ||||| | || || | |||||||||||| || ||||| || Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1622 TTTACAGTTTGACTGCCAGTCCCTTTGAGCCCCAATTAACTCTTTCCAATGCT--TTAAT 1679 ||| || || | |||||||| | || || || | |||| || ||||||| ||||| Sbjct 307 TTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1680 TTCAAATAATTGGGGCTTATGTCATCAATGACGTTGTACTCAGCGGCATTGGAATAGACA 1739 | |||||||| || |||||||| |||||||| ||| || |||| || || Sbjct 248 T--AAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 191 Query 1740 CGCGAATTGAAGTCGAGGTGACCCATGAGATAATTGTGTGGTCCCAATGAACGA 1793 ||||| || || | || || | || |||||||| || ||||||||| Sbjct 190 TTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 >seq20728 Length=3653 Score = 84.2 bits (92), Expect = 4e-13 Identities = 166/237 (70%), Gaps = 9/237 (4%) Strand=Plus/Plus Query 1587 GGGATACCTCCTTTAATTTGAACCGGCTTTCCATA-TTTACAGTTTGACTGCCAGTCCCT 1645 || || || ||||||||||||| || ||||| || ||| || || | ||||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCA-TTGGCCTGCC-GTTGCG 1499 Query 1646 TTGAGCCCCAATTAACTCTTTCCAATGCTTT--AATTTCAAATAATTGGGGCTTATGTCA 1703 || || || | |||| || |||||||| |||| |||||||| || | |||| Sbjct 1500 CTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATT--AAATAATTCGGAGGGACGTCA 1557 Query 1704 TCAATGACGTTGTACTCA-GCGGCATTGGAATAGACACGCGAATTGAAGTCGAGGTGACC 1762 || |||||||| || ||| || |||| || || |||||| || || | | Sbjct 1558 TCGATGACGTTATA-TCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATAAATCT 1616 Query 1763 CATGAGATAATTGTGTGGTCCCAATGAACGAGCCCACATTGTTTTGCCTGTTCTTGA 1819 ||| | || |||||||| | |||||||||||||| |||||| ||| ||||||| Sbjct 1617 CATTATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGA 1673 >seq5493 Length=32325 Score = 84.2 bits (92), Expect = 4e-13 Identities = 114/154 (74%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 1566 GGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA-TTT 1624 |||||||||| ||| || | | ||| || | |||||||||||| || || || || || Sbjct 31559 GGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTTC 31500 Query 1625 ACAGTTTGACTGCCAGTCCCTTTGAGCCCCAATTAACTCTTTCCAATGCTTTAATTTCAA 1684 ||| ||||| ||||||| ||||| || || || ||||||||| || || || || Sbjct 31499 ACA-TTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCA--GC-TTCTTTGCAG 31444 Query 1685 ATAATTGGGGCTTATGTCATCAATGACGTTGTAC 1718 ||| | || || ||||||||||| ||||||| Sbjct 31443 ATATGTCGGTGATACGTCATCAATGATGTTGTAC 31410 >seq953 Length=224861 Score = 82.4 bits (90), Expect = 1e-12 Identities = 178/261 (68%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 1563 CCAGGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA- 1621 ||||||||||| | ||||| || || || ||||||||||||| | ||||| || Sbjct 1843 CCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCGTAC 1902 Query 1622 TTTACAGTTTGAC-TGCCAGTCCCTTTGAGCCCCAATTAACTCTTTCCAATGCTTT--AA 1678 ||| || ||||| ||||| | | || | || | |||| || ||| |||| || Sbjct 1903 TTTGCA--TTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTAA 1960 Query 1679 TTTCAAATAATTGGGGCTTATGTCATCAATGACGTTGTACTCAGCGGCATTGGAATAGAC 1738 || |||||||| || | ||| || || ||||| ||| || |||| || || Sbjct 1961 TT--AAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGT 2018 Query 1739 ACGCGAATTGAAGTCGAGGTGACCCATGAGATAATTGTGTGGTCCCAATGAACGAGCCCA 1798 |||||| || || | | ||| | || |||||||| || |||||||||||||| Sbjct 2019 TTTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2078 Query 1799 CATTGTTTTGCCTGTTCTTGA 1819 |||||| ||| ||||||| Sbjct 2079 TGCTGTTTTCCCTATTCTTGA 2099 >seq442 Length=237535 Score = 80.6 bits (88), Expect = 4e-12 Identities = 178/260 (68%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 1563 CCAGGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA- 1621 ||||||||||| || |||| || || | |||||||||||||| | ||||| || Sbjct 22781 CCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAACTGATTTTCCGTAC 22840 Query 1622 TTTACAGTTTGACTGCCAGTCCCTTTGAGCCCCAATTAACTCTTTCCAATGC--TTTAAT 1679 ||| || || | |||| ||| | ||| || || | |||| || ||||| |||||| Sbjct 22841 TTTGCA-TTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTTAATAATGCTTTTTAAT 22899 Query 1680 TTCAAATAATTGGGGCTTATGTCATCAATGACGTTGTACTCAGCGGCATTGGAATAGACA 1739 | |||||||| | | ||| || || ||||| ||| | || |||| || || Sbjct 22900 T--AAATAATTCGAAGGGACGTC-TCGATAACGTTATAC-CTGCATCATTTGAGTACGTT 22955 Query 1740 CGCGAATTGAAGTCGAGGTGACCCATGAGATAATTGTGTGGTCCCAATGAACGAGCCCAC 1799 | |||| || || | | ||| | || |||||||| || ||||||||||| || Sbjct 22956 TTCAAATTAAAATCAATAAATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCTCAT 23015 Query 1800 ATTGTTTTGCCTGTTCTTGA 1819 |||||| ||| ||||||| Sbjct 23016 GCTGTTTTCCCTATTCTTGA 23035 >seq4295 Length=67413 Score = 78.8 bits (86), Expect = 2e-11 Identities = 165/244 (68%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 1566 GGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTA 1625 |||||| | ||||||||| | ||||| || |||||||||||| | || || || || || Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1626 CAGTTTGACTGCCAGTCCCTTTGAGCCCCAATTAACTCTTTCCAATGCTTTAATTTCAAA 1685 ||||| | ||| | || ||| |||| | |||||| |||| ||| | |||| Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1686 TA--ATTGGGGCTTATGTCATCAATGACGTTGTACTCAGCGGCATTGGAATAGACACGCG 1743 || || | | || |||||| || ||||||||| || ||| ||| | || Sbjct 46723 TAGGATAGAG--ATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCG 46666 Query 1744 AATTGAAGTCGAGGTGACCCATGAGATAATTGTGTGGTCCCAATGAACGAGCCCACATTG 1803 |||| || || | | ||||| | || || ||||| | || || || ||||| |||| Sbjct 46665 AATTAAAATCCATGAAGCCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTG 46606 Query 1804 TTTT 1807 | || Sbjct 46605 TCTT 46602 >seq815 Length=151552 Score = 78.8 bits (86), Expect = 2e-11 Identities = 176/259 (68%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 1563 CCAGGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA- 1621 ||||||||||| || || || || || || |||||||||||| | || ||| | || Sbjct 85421 CCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCGTAC 85362 Query 1622 TTTACAGTTTGACTGCCAGTCCCTTTGAGCCCCAATTAACTCTTTCCAATGCTT-TAATT 1680 ||| || || | || ||||| | || || || | |||| || ||| ||| ||| | Sbjct 85361 TTTGCA-TTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAAAT 85303 Query 1681 TCAAATAATTGGGGCTTATGTCATCAATGACGTTGTACTCAGCGGCATTGGAATAGACAC 1740 | |||||||| | | ||| || |||||||| ||| || |||| || || Sbjct 85302 T-AAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 85244 Query 1741 GCGAATTGAAGTCGAGGTGACCCATGAGATAATTGTGTGGTCCCAATGAACGAGCCCACA 1800 ||||| || || | ||||| | || ||||||| || ||| |||||||||| Sbjct 85243 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCCCATG 85184 Query 1801 TTGTTTTGCCTGTTCTTGA 1819 || |||| ||| ||||||| Sbjct 85183 TTATTTTCCCTATTCTTGA 85165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8299299048040