Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_010791.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq22495 102 1e-18 seq3439 102 1e-18 seq3283 96.9 6e-17 seq35612 91.5 3e-15 seq953 87.8 3e-14 seq77518 86.0 1e-13 seq3059 84.2 4e-13 seq4104 82.4 1e-12 seq80468 78.8 2e-11 seq33 78.8 2e-11 seq442 77.0 6e-11 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 177/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 1592 GAGGAAGAAGAATTTTGCATTTTGTAATGCCCACCTTTTGAGAGCTGCATTCCGCTCCTC 1651 || |||| ||||| | |||||||||| | ||| |||| | || ||| |||| Sbjct 458 GACGAAGTGGAATTCTACATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCAA 399 Query 1652 GTCTAAGTATTCTTTATAGGACGAAGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAAT 1711 |||||| || ||||||||| || || || |||||||| || | |||| | |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1712 ACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGC 1771 || | ||||||||||| |||||| ||||| || | ||| ||||||| | || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1772 CCCCATGAACTCTTTAAAGTGCT------TTAAGTAGTGGGGGTCTACATCATCAATCAC 1825 || | ||||| || | | |||| |||| || | || | ||||| || || Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1826 GTTGTACCAGGCATCATT 1843 ||| ||||| |||||||| Sbjct 218 GTTATACCATGCATCATT 201 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 171/248 (69%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 1602 AATTTTGCATTTTGTAATGCCCACCTTTTGAGAGCTGCATTCCGCTCCTCGTCTAAGTAT 1661 |||| ||||||||||| | ||| |||| | || ||| |||| |||||| | Sbjct 1041 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAAC 982 Query 1662 TCTTTATAGGACGAAGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTA 1721 ||||||||| | || || ||||||| || | |||| | ||||| || |||||| Sbjct 981 GTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTA 922 Query 1722 ATTTGAATTGGTTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAAC 1781 ||||||| |||||| ||||| || | |||| ||||| | | || || || | |||| Sbjct 921 ATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAAC 862 Query 1782 TCTTTAAAGTGCT------TTAAGTAGTGGGGGTCTACATCATCAATCACGTTGTACCAG 1835 | || | | |||| |||| || | || |||||||| || ||||| ||||| Sbjct 861 TGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCAT 802 Query 1836 GCATCATT 1843 |||||||| Sbjct 801 GCATCATT 794 >seq3283 Length=49157 Score = 96.9 bits (106), Expect = 6e-17 Identities = 176/258 (68%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 1592 GAGGAAGAAGAATTTTGCATTTTGTAATGCCCACCTTTTGAGAGCTGCATTCCGCTCCTC 1651 || |||| ||||| ||||||||||| | ||| |||| | || ||| |||| Sbjct 2371 GACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAA 2312 Query 1652 GTCTAAGTATTCTTTATAGGACGAAGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAAT 1711 || ||| | ||||||||| | || || |||||||| || | |||| | ||||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1712 ACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGC 1771 || ||||||||||||| |||||||||||| || | ||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1772 CCCCATGAACTCTTTAAAGTGCT------TTAAGTAGTGGGGGTCTACATCATCAATCAC 1825 || | ||||| || | | |||| |||| || | || || || || || || Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1826 GTTGTACCAGGCATCATT 1843 ||| ||||| |||||||| Sbjct 2131 GTTATACCATGCATCATT 2114 >seq35612 Length=1588 Score = 91.5 bits (100), Expect = 3e-15 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 1592 GAGGAAGAAGAATTTTGCATTTTGTAATGCCCACCTTTTGAGAGCTGCATTCCGCTCCTC 1651 || |||| ||||| ||||||||||| | ||| |||| | || ||| |||| Sbjct 1419 GACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAA 1478 Query 1652 GTCTAAGTATTCTTTATAGGACGAAGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAAT 1711 || ||| || ||||||||| || || || |||||||| || | |||| | ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1712 ACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTTGCTTTGCCA 1759 || ||||||||||||| |||||| ||||| || | |||| ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq953 Length=224861 Score = 87.8 bits (96), Expect = 3e-14 Identities = 174/258 (67%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 1592 GAGGAAGAAGAATTTTGCATTTTGTAATGCCCACCTTTTGAGAGCTGCATTCCGCTCCTC 1651 || |||| ||||| |||||||||||| | ||| |||| | || ||| || Sbjct 1752 GATGAAGTGGAATTCTGCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGAATCTAA 1811 Query 1652 GTCTAAGTATTCTTTATAGGACGAAGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAAT 1711 |||||| || ||||||||| || || || |||||||| | | |||| | ||||| Sbjct 1812 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAAT 1871 Query 1712 ACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGC 1771 || |||||||||||||||| ||| ||||| || | ||| ||||| | | || | Sbjct 1872 CCCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTAC 1931 Query 1772 CCCCATGAACTCTTTAAAGTGCT------TTAAGTAGTGGGGGTCTACATCATCAATCAC 1825 || | ||||| || | | | || |||| || | || || || || || || Sbjct 1932 GCCTACGAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAAC 1991 Query 1826 GTTGTACCAGGCATCATT 1843 ||| ||||| |||||||| Sbjct 1992 GTTATACCATGCATCATT 2009 >seq77518 Length=14724 Score = 86.0 bits (94), Expect = 1e-13 Identities = 229/345 (66%), Gaps = 15/345 (4%) Strand=Plus/Minus Query 1592 GAGGAAGAAGAATTTTGCATTTTGTAATGCCCACCTTTTGAGAGCTGCATTCCGCTCCTC 1651 || |||| ||||| |||||||||||| | |||| ||| | || ||| || Sbjct 2494 GATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAA 2435 Query 1652 GTCTAAGTATTCTTTATAGGACGAAGTTGGGCCT---GGATTGCAGAGGAAGATAGTGGG 1708 || ||| || ||||||| || || ||| || |||||||| || | |||| || Sbjct 2434 ATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGG 2375 Query 1709 AATACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTG 1768 ||| || ||||||||||||| || ||| |||| || | || || |||| | ||| Sbjct 2374 AATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTG 2315 Query 1769 GGCCCCCATGAACTCTTTAAAGTGC--TTTAAGTA------GTGGGGGTCTACATCATCA 1820 || || | ||||| || | | ||| ||||| || ||| || ||||||||| Sbjct 2314 TGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGG--GACATCATCA 2257 Query 1821 ATCACGTTGTACCAGGCATCATTATTGTACACTCTTGGACTGAGGTCTA-AGTGACCACA 1879 || ||||| ||||| || || || ||| | | | | | || | | | ||| Sbjct 2256 ATGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCA-T 2198 Query 1880 TAGATAATTATGTGGCCCCAACGACCTGGCCCACATTGTTTTGCC 1924 || |||||||||||| |||||| | | ||||| | |||||| || Sbjct 2197 TATATAATTATGTGGACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq3059 Length=182465 Score = 84.2 bits (92), Expect = 4e-13 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1592 GAGGAAGAAGAATTTTGCATTTTGTAATGCCCACCTTTTGAGAGCTGCATTCCGCTCCTC 1651 || |||| ||||| | ||||||||| | ||| |||| | || ||| |||| Sbjct 20507 GACGAAGTGGAATTCTACATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAA 20448 Query 1652 GTCTAAGTATTCTTTATAGGACGAAGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAAT 1711 || ||| | ||||| ||| || || || |||||||| || | |||| | ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1712 ACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGC 1771 || |||||||||||||||||||| ||||| || | ||| | ||||| | || || Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGC 20328 Query 1772 CCCCATGAACTCTTTAAAGTGCTT 1795 || | ||||| || | | ||||| Sbjct 20327 GCCTACGAACTGTTGATAATGCTT 20304 >seq4104 Length=64936 Score = 82.4 bits (90), Expect = 1e-12 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 1592 GAGGAAGAAGAATTTTGCATTTTGTAATGCCCACCTTTTGAGAGCTGCATTCCGCTCCTC 1651 || |||| ||||| ||||||||||| | ||| |||| | || ||| |||| Sbjct 20918 GACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAA 20859 Query 1652 GTCTAAGTATTCTTTATAGGACGAAGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAAT 1711 || ||| | ||||||||| || || || |||||||| || | |||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1712 ACCACCTTTAATTTGAATTGGTTTCCCGTATTT 1744 || ||||||||||||| |||||| ||||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq80468 Length=4946 Score = 78.8 bits (86), Expect = 2e-11 Identities = 111/156 (71%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 1596 AAGAAGAATTTTGCATTTTGTAATGCCCACCTTTTGAGAGCTGCATTCCGCTCCTCGTCT 1655 ||| |||||| |||||||||||| | ||| |||| | || ||| |||| | Sbjct 4182 AAGTAGAATTCTGCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCATATTC 4241 Query 1656 AAGTATTCTTTATAGGACGAAGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATACCA 1715 ||| || ||||||||| || || || ||||||| || | |||| | ||||| || Sbjct 4242 AAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCCG 4301 Query 1716 CCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTTG 1751 |||||||| |||| ||||| ||||| || || ||| Sbjct 4302 CCTTTAATCTGAACAGGTTTTCCGTACTTTGTATTG 4337 >seq33 Length=454124 Score = 78.8 bits (86), Expect = 2e-11 Identities = 225/341 (66%), Gaps = 14/341 (4%) Strand=Plus/Minus Query 1592 GAGGAAGAAGAATTTTGCATTTTGTAATGCCCACCTTTTGAGAGCTGCATTCCGCTCCTC 1651 || |||| ||||| |||||| ||||| | |||| ||| | || ||| || Sbjct 403395 GATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTAT 403336 Query 1652 GTCTAAGTATTCTTTATAGGACGAAGTTGGGCCT--GGATTGCAGAGGAAGATAGTGGGA 1709 || ||| | ||||||| ||| | ||| || |||||||| || | |||| ||| Sbjct 403335 ATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGA 403276 Query 1710 ATACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGG 1769 || || | ||||||||||| |||||| ||||| || | || ||||||| | || Sbjct 403275 ATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGT 403216 Query 1770 GCCCCCATGAACTCTT--TAAAGTGCTTTAAGTA------GTGGGGGTCTACATCATCAA 1821 | || | ||||| || ||| | ||||| || ||| || || ||||||| Sbjct 403215 ACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGG--GACGTCATCAA 403158 Query 1822 TCACGTTGTACCAGGCATCATTATTGTACACTCTTGGACTGAGGTCTA-AGTGACCACAT 1880 | ||||| ||||| || || || ||| ||| | | | | || | | | ||| | Sbjct 403157 TGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCA-TT 403099 Query 1881 AGATAATTATGTGGCCCCAACGACCTGGCCCACATTGTTTT 1921 | ||||||||||| |||||||| | ||||| | |||||| Sbjct 403098 ATGTAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTT 403058 >seq442 Length=237535 Score = 77.0 bits (84), Expect = 6e-11 Identities = 134/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 1602 AATTTTGCATTTTGTAATGCCCACCTTTTGAGAGCTGCATTCCGCTCCTCGTCTAAGTAT 1661 |||| || ||||||||| | ||| |||| | || ||| || || ||| || Sbjct 22700 AATTCTGTATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGAATCTAAATCCAAGAAT 22759 Query 1662 TCTTTATAGGACGAAGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTA 1721 ||||||||| || | || || |||||||| || |||| | ||||| | |||||| Sbjct 22760 GTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTA 22819 Query 1722 ATTTGAATTGGTTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAAC 1781 ||||||| || ||| ||||| || | ||| ||| ||| | ||| || || | |||| Sbjct 22820 ATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAAC 22879 Query 1782 TCTTTAAAGTGCTTT 1796 | || | | |||||| Sbjct 22880 TGTTAATAATGCTTT 22894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8644570348960