Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_010812.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq3283 116 6e-23 seq3439 111 3e-21 seq5745 109 1e-20 seq77518 102 1e-18 seq33 95.1 2e-16 seq22495 93.3 7e-16 seq35612 89.7 9e-15 seq4104 89.7 9e-15 seq80468 82.4 1e-12 seq54129 82.4 1e-12 seq3059 82.4 1e-12 >seq3283 Length=49157 Score = 116 bits (128), Expect = 6e-23 Identities = 177/250 (71%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 1603 GAATTCTGCATTCTTGAGAGCCCACTCTTTTAATGCTGAATTTTTATCCTCATTCAAGTA 1662 |||||||||||| | |||| ||| ||| | |||||| ||| || |||| | Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 2303 Query 1663 CTCTTTATATGAT-GATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTT 1721 | |||||| ||| ||| || || ||||||||||| | |||| |||| || || |||| Sbjct 2302 CGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTT 2244 Query 1722 TAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGA 1781 ||||||||| ||||||||||||||| | ||| ||||| | | || || || | || Sbjct 2243 TAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGA 2184 Query 1782 ATTCTTTAAAGTGCT------TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTATACC 1835 | | || | | |||| ||| || | || |||||| || ||||||||||||| Sbjct 2183 ACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACC 2124 Query 1836 AAGCATCATT 1845 | |||||||| Sbjct 2123 ATGCATCATT 2114 >seq3439 Length=62978 Score = 111 bits (122), Expect = 3e-21 Identities = 173/248 (70%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 1604 AATTCTGCATTCTTGAGAGCCCACTCTTTTAATGCTGAATTTTTATCCTCATTCAAGTAC 1663 ||||||||||| | |||| ||| ||| | |||||| ||| || ||| || Sbjct 1041 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAAC 982 Query 1664 TCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTA 1723 |||||| ||| || || || |||||||||| | |||| |||| || || |||||| Sbjct 981 GTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTA 922 Query 1724 ATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAAT 1783 ||||||| |||||| |||||||| | |||| ||||| | | || || || | ||| Sbjct 921 ATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAAC 862 Query 1784 TCTTTAAAGTGCT------TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTATACCAA 1837 | || | | |||| ||| || | || ||| ||||| |||||||||||||| Sbjct 861 TGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCAT 802 Query 1838 GCATCATT 1845 |||||||| Sbjct 801 GCATCATT 794 >seq5745 Length=45059 Score = 109 bits (120), Expect = 1e-20 Identities = 228/335 (68%), Gaps = 15/335 (4%) Strand=Plus/Plus Query 1604 AATTCTGCATTCTTGAGAGCCCACTCTTT-TAATGCTGAATTTTTATCCTCATTCAAGTA 1662 ||||| ||||| | | || | || ||| |||| ||||||| ||| || ||| | Sbjct 43457 AATTCAGCATTTTGTAAAGTCAACGATTTCTAATT-TGAATTTGAATCTATATCTAAGAA 43515 Query 1663 CTCTTTATATGATGATGTTGGGCCT---GGATTGCAAAGGAAGATAGTTGGGATTCCACC 1719 | ||||||| ||| | ||| || |||||||||| | |||| ||| || ||||| Sbjct 43516 CGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACC 43575 Query 1720 TTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1779 ||||||||||| |||||| |||||||| | || ||||| | | ||| || || || Sbjct 43576 TTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTAT 43635 Query 1780 GAATTCTT--TAAAGTGCTTTAGGTA------GTGGGGGTCGACGTCATCAATGACGTTA 1831 ||| | || ||| || |||| || ||| || || |||||||||||||||| Sbjct 43636 GAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAATGACGTTA 43693 Query 1832 TACCAAGCATCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTA 1891 ||||| || || || || || | | ||| ||| | | || | ||||||| Sbjct 43694 TACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTA 43753 Query 1892 TGTGGTCCCAGTGATCTGGCCCACATTGTTTTACC 1926 ||||| |||| || | ||||| | ||||||||| Sbjct 43754 TGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq77518 Length=14724 Score = 102 bits (112), Expect = 1e-18 Identities = 225/335 (67%), Gaps = 13/335 (4%) Strand=Plus/Minus Query 1603 GAATTCTGCATTCTTGAGAGCCCACTCTTTTAATGCTGAATTTTTATCCTCATTCAAGTA 1662 |||||||||||| | | || |||| |||| | ||||||| ||| || |||| | Sbjct 2485 GAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAAATCCAAGAA 2426 Query 1663 CTCTTTATATGATGATGTTGGGCCT---GGATTGCAAAGGAAGATAGTTGGGATTCCACC 1719 ||||||| ||| | ||| || ||||||||||| | |||| ||| || || || Sbjct 2425 TGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCC 2366 Query 1720 TTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1779 ||||||||||| || ||| ||||||| | || || |||| | ||| || || | Sbjct 2365 TTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTAC 2306 Query 1780 GAATTCTTTAAAGTGC--TTTAGGTA------GTGGGGGTCGACGTCATCAATGACGTTA 1831 ||| | || | | ||| |||| || ||| || ||| ||||||||||||||| Sbjct 2305 GAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGG--GACATCATCAATGACGTTA 2248 Query 1832 TACCAAGCATCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTA 1891 ||||| || || || ||| || | ||| ||| | | || | ||||||| Sbjct 2247 TACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTATATAATTA 2188 Query 1892 TGTGGTCCCAGTGATCTGGCCCACATTGTTTTACC 1926 ||||| |||| | | ||||| | ||||||||| Sbjct 2187 TGTGGACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq33 Length=454124 Score = 95.1 bits (104), Expect = 2e-16 Identities = 221/331 (67%), Gaps = 12/331 (4%) Strand=Plus/Minus Query 1603 GAATTCTGCATTCTTGAGAGCCCACTCTTTTAATGCTGAATTTTTATCCTCATTCAAGTA 1662 |||||||||||||| | || |||| ||| | ||||||| ||| || ||| | Sbjct 403386 GAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTATATCGAAGAA 403327 Query 1663 CTCTTTATATGATGATGTTGGGCCT--GGATTGCAAAGGAAGATAGTTGGGATTCCACCT 1720 | ||||||| || | ||| || ||||||||||| | |||| ||| || || | | Sbjct 403326 CGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTT 403267 Query 1721 TTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATG 1780 |||||||||| |||||| |||||||| | || ||||||| | || | || | | Sbjct 403266 TTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACG 403207 Query 1781 AATTCTT--TAAAGTGCTTTAGGTA------GTGGGGGTCGACGTCATCAATGACGTTAT 1832 || | || ||| | |||| || ||| || |||||||||||||||||||| Sbjct 403206 AACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTAT 403149 Query 1833 ACCAAGCATCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTAT 1892 |||| || || || ||| | | | ||| ||| | | || | ||||||| Sbjct 403148 ACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTATGTAATTAT 403089 Query 1893 GTGGTCCCAGTGATCTGGCCCACATTGTTTT 1923 |||| |||| || | ||||| | |||||| Sbjct 403088 GTGGACCCAACGAACGTGCCCAAACTGTTTT 403058 >seq22495 Length=567 Score = 93.3 bits (102), Expect = 7e-16 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1666 TTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAAT 1725 |||||| ||| | || || ||||||||||| | |||| || | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1726 TTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1785 ||||| |||||| |||||||| | ||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1786 TTTAAAGTGCT------TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTATACCAAGC 1839 || | | |||| ||| || | || || |||||| |||||||||||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1840 ATCATT 1845 |||||| Sbjct 206 ATCATT 201 >seq35612 Length=1588 Score = 89.7 bits (98), Expect = 9e-15 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1603 GAATTCTGCATTCTTGAGAGCCCACTCTTTTAATGCTGAATTTTTATCCTCATTCAAGTA 1662 |||||||||||| | |||| ||| ||| | |||||| ||| || |||| | Sbjct 1428 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 1487 Query 1663 CTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTT 1722 |||||| ||| | || || ||||||||||| | |||| |||| || || ||||| Sbjct 1488 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTT 1547 Query 1723 AATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCA 1761 |||||||| |||||| |||||||| | |||| ||||| Sbjct 1548 AATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 89.7 bits (98), Expect = 9e-15 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1603 GAATTCTGCATTCTTGAGAGCCCACTCTTTTAATGCTGAATTTTTATCCTCATTCAAGTA 1662 |||||||||||| | |||| ||| ||| | |||||| ||| || |||| | Sbjct 20909 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 20850 Query 1663 CTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTT 1722 | |||||| ||| | || || ||||||||||| | |||| |||| || || ||||| Sbjct 20849 CGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 20790 Query 1723 AATTTGAATTGGTTTCCCGTACTT 1746 |||||||| |||||| |||||||| Sbjct 20789 AATTTGAACTGGTTTTCCGTACTT 20766 >seq80468 Length=4946 Score = 82.4 bits (90), Expect = 1e-12 Identities = 170/252 (67%), Gaps = 11/252 (4%) Strand=Plus/Plus Query 1603 GAATTCTGCATTCTTGAGAGCCCACTCTTTTAATGCTGAATTTTTATCCTCATTCAAGTA 1662 |||||||||||| | | || ||| ||| | |||||| ||| ||||||| | Sbjct 4187 GAATTCTGCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCATATTCAAGAA 4246 Query 1663 CTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTT 1722 |||||| ||| | || || |||||||||| | |||| |||| ||||| ||||| Sbjct 4247 TGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCCGCCTTT 4306 Query 1723 AATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCA--GTCCCTTTGGGCCCCCATG 1780 ||| |||| ||||| |||||||| || ||| | ||| || | || || || | | Sbjct 4307 AATCTGAACAGGTTTTCCGTACTTTGTATTGGCCTACCATTGTGC---TGTGCGCCTACG 4363 Query 1781 AATTCTTTAAAGTGCT------TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTATAC 1834 || | || | | |||| ||| || | | |||||| | |||||||||||| Sbjct 4364 AACTGTTGATAATGCTTCTTAATTAAATAATTTGAAGGGACGTCGTTGATGACGTTATAC 4423 Query 1835 CAAGCATCATTG 1846 || |||| |||| Sbjct 4424 CATGCATAATTG 4435 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1682 GGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCG 1741 || || ||||||||||| | |||| |||| || || |||||||||||||||||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1742 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1796 ||||| | ||| || |||| || || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1797 -TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTATACCAAGCATCATT 1845 ||| || | || ||| || || |||||||||||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq3059 Length=182465 Score = 82.4 bits (90), Expect = 1e-12 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1603 GAATTCTGCATTCTTGAGAGCCCACTCTTTTAATGCTGAATTTTTATCCTCATTCAAGTA 1662 ||||||| |||| | |||| ||| ||| | |||||| ||| || |||| | Sbjct 20498 GAATTCTACATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 20439 Query 1663 CTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTT 1722 | ||||| ||| | || || ||||||||||| | |||| |||| || || ||||| Sbjct 20438 CGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 20379 Query 1723 AATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1782 ||||||||||||||| ||||| || | ||| | ||||| | || || || | ||| Sbjct 20378 AATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAA 20319 Query 1783 TTCTTTAAAGTGCTT 1797 | || | | ||||| Sbjct 20318 CTGTTGATAATGCTT 20304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8702115565780