Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_010833.1 Length=2708 Score E Sequences producing significant alignments: (Bits) Value seq4295 105 1e-19 seq3283 105 1e-19 seq77518 104 4e-19 seq5745 104 4e-19 seq1993 104 4e-19 seq33 104 4e-19 seq22495 98.7 2e-17 seq3439 96.9 6e-17 seq54129 87.8 3e-14 seq442 80.6 5e-12 seq953 78.8 2e-11 seq815 78.8 2e-11 seq20728 77.0 6e-11 seq6801 77.0 6e-11 seq3059 77.0 6e-11 >seq4295 Length=67413 Score = 105 bits (116), Expect = 1e-19 Identities = 237/350 (68%), Gaps = 7/350 (2%) Strand=Plus/Minus Query 1554 GGGGGCGTCGAGGAAGATGAATTTAGCATT-CTTGATCGTCCAGTTCTTCAGAGCAAGGT 1612 ||||| |||| ||||| ||||| ||||| | | || ||||| ||||||| || | | Sbjct 46949 GGGGGTGTCGGCGAAGAAGAATTCTGCATTTCCTAAT-GTCCATTTCTTCAAAGTTAAAT 46891 Query 1613 TTTCCTCTTTCTCGAGGAAATCTTTATAGCTGGCCCCCTC---TCCA-GGATTGCAGAGC 1668 || |||| ||||| ||| ||||||| | | | || ||| |||||| ||||| Sbjct 46890 TTATATCTTGTTCGAGAAAAGCTTTATA-CGAACACTCTGGTGTCCTTGGATTGTAGAGC 46832 Query 1669 ACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGTATTTGCAATTTGACTGC 1728 |||||| ||||||| || |||||||||||| | || || ||||| ||| |||||| | | Sbjct 46831 ACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTGGCATTTGAGTTC 46772 Query 1729 CAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGCTTTAGGTAGTGCGGAGGG 1788 || | | || || | || | ||||| || | ||| || | ||| ||| Sbjct 46771 CAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAATAGGATAGAGAT 46712 Query 1789 ACGTCATCAATGACGTTATATTCAGCCTCATTTGAATAGACCCTGGAGTTGAAGTCCAGG 1848 |||||||| || ||||| || || | ||| ||| | | || || || |||| | Sbjct 46711 ACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGAATTAAAATCCATG 46652 Query 1849 TGTCCACTGAGATAGTTATGGGCCCCTAAAGCACGAGCCCACATTGTCTT 1898 || | | |||||||| | | ||||| || ||||| |||||||| Sbjct 46651 AAGCCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGTCTT 46602 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 178/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 1653 TCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGTA 1712 |||||||||||| || ||||| ||| || ||||||||||||||||| || || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1713 -TTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGCT 1771 ||||| ||| | |||||| | || || || | || | || | ||||| Sbjct 2221 CTTTGC-ATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1772 TTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATATTCAGCCTCATTTGAATAGACCC 1831 ||| || | |||||||||||| || ||||||||||| || |||||||| || Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 2103 Query 1832 TGGAGTTGAAGTCCAGGTGTCCACTGAGATAGTTATGGGCCCCTAAAGCACGAGCCCACA 1891 |||| || || |||| ||| | | ||||| || | ||||| | ||||||||| Sbjct 2102 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 2043 Query 1892 TTGTCTTGCCTGTTC 1906 ||| || ||| ||| Sbjct 2042 CTGTTTTCCCTATTC 2028 >seq77518 Length=14724 Score = 104 bits (114), Expect = 4e-19 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 1654 CCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGTA- 1712 ||||||||||| || ||||| |||| || ||||||||||||||||| | ||| |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1713 TTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGCTT 1772 |||||| |||||||| |||| ||| ||||| | || | || | |||||| | Sbjct 2340 TTTGCA-TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1773 TAGGTAGTGCGGAGGGACGTCATCAATGACGTTATA 1808 || || |||||||| ||||||||||||||||| Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATA 2246 >seq5745 Length=45059 Score = 104 bits (114), Expect = 4e-19 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 1654 CCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGTA- 1712 ||||||||||| | |||||| |||| || || |||||||||||||| || || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1713 TTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGCTT 1772 ||||| |||||||||||| | ||| ||||| || || | || | || ||| | Sbjct 43601 TTTGC-ATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1773 TAGGTAGTGCGGAGGGACGTCATCAATGACGTTATA 1808 || || ||||||| |||||||||||||||||| Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATA 43695 >seq1993 Length=81530 Score = 104 bits (114), Expect = 4e-19 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 1651 TCTCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCG 1710 || ||||||||||| |||||||| |||| || ||| ||||||||||||| || || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1711 TA-TTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAG 1769 || |||||| ||||||||||| | ||| |||| | || | || | || ||| Sbjct 74346 TACTTTGCA-TTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1770 CTTTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATA 1808 ||| || |||||||||||||||||||||||||| Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATA 74249 >seq33 Length=454124 Score = 104 bits (114), Expect = 4e-19 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 1654 CCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGTA- 1712 ||||||||||| |||||||| |||| || |||| |||||||||||| || |||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1713 TTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGCTT 1772 |||||| ||||||||||||| || | || | || | || | || ||| | Sbjct 403242 TTTGCA-TTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1773 TAGGTAGTGCGGAGGGACGTCATCAATGACGTTATA 1808 || || |||||||||||||||||||||||||| Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATA 403148 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 1653 TCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGTA 1712 |||||||||||| || ||||| | | || |||| |||||||||||| || |||||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1713 -TTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGCT 1771 |||||| || | |||||||| || || || | || | || || ||||| Sbjct 308 CTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1772 TTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATATTCAGCCTCATTTGAATAGACCC 1831 ||| || | |||||||| |||||| ||||||||||| || |||||||| || Sbjct 249 TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTT 190 Query 1832 TGGAGTTGAAGTCCAGGTGTCCACTGAGATAGTTATGGGCCCCTAAAGCACGA 1884 |||| || || |||| ||| | | ||||| || | ||||| | |||| Sbjct 189 TGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 176/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 1653 TCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGTA 1712 |||| ||||||| || ||||| ||| || ||||||||||||||||| || |||||||| Sbjct 961 TCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTA 902 Query 1713 -TTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGCT 1771 ||||| || | ||||| | || || || | || | || | ||||| Sbjct 901 CTTTGC-GTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 843 Query 1772 TTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATATTCAGCCTCATTTGAATAGACCC 1831 ||| || | ||||||||| ||||| ||||||||||| || |||||||| || Sbjct 842 TTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTT 783 Query 1832 TGGAGTTGAAGTCCAGGTGTCCACTGAGATAGTTATGGGCCCCTAAAGCACGAGCCCACA 1891 |||| || || |||| ||| | | ||||| || | ||||| | ||||||||| Sbjct 782 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 723 Query 1892 TTGTCTTGCCTGTTC 1906 ||| || ||| ||| Sbjct 722 CTGTTTTCCCTATTC 708 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 1653 TCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGTA 1712 |||||||||||| || ||||| ||| || |||||||||||||||| || |||||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1713 -TTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGCT 1771 |||||| || | ||| |||| | || || || | || | || | ||||| Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1772 TTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATATTCAGCCTCATTTGAATA 1826 ||| || | ||||||||| || || ||||||||||| | |||||||| || Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 >seq442 Length=237535 Score = 80.6 bits (88), Expect = 5e-12 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 1653 TCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGTA 1712 |||||||||||| || |||| ||| || |||||||||||||||| | |||||||| Sbjct 22780 TCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAACTGATTTTCCGTA 22839 Query 1713 -TTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGCT 1771 ||||| ||| | |||| ||| ||| || || | || | || | |||||| Sbjct 22840 CTTTGC-ATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTTAATAATGCTTTTTAA 22898 Query 1772 TTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATATTCAGCCTCATTTGAATA 1826 ||| || | || ||||||||| || || |||||||| | || |||||||| || Sbjct 22899 TTAAATAATTCGAAGGGACGTC-TCGATAACGTTATA-CCTGCATCATTTGAGTA 22951 >seq953 Length=224861 Score = 78.8 bits (86), Expect = 2e-11 Identities = 173/256 (68%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 1653 TCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGTA 1712 |||||||||||| | ||||| ||| || |||||||||||||||| | |||||||| Sbjct 1842 TCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCGTA 1901 Query 1713 -TTTGCAATTTGA-CTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGC 1770 |||||| |||| |||||| | || | || | || | || | | |||| Sbjct 1902 CTTTGCA--TTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1771 TTTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATATTCAGCCTCATTTGAATAGACC 1830 ||| || | |||||||||||| || || |||||||| || |||||||| || Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTT 2019 Query 1831 CTGGAGTTGAAGTCCAGGTGTCCACTGAGATAGTTATGGGCCCCTAAAGCACGAGCCCAC 1890 | || || || |||| || | | ||||| || | ||||| | ||||||||| Sbjct 2020 TTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2079 Query 1891 ATTGTCTTGCCTGTTC 1906 ||| || ||| ||| Sbjct 2080 GCTGTTTTCCCTATTC 2095 >seq815 Length=151552 Score = 78.8 bits (86), Expect = 2e-11 Identities = 172/255 (67%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 1653 TCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGTA 1712 |||||||||||| || || || ||| || ||||||||||||||| | || ||| |||| Sbjct 85422 TCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCGTA 85363 Query 1713 -TTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGCT 1771 ||||| ||| | || ||||| || || || | || | || | | ||| Sbjct 85362 CTTTGC-ATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAAA 85304 Query 1772 TTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATATTCAGCCTCATTTGAATAGACCC 1831 ||| || | | ||| |||||| || ||||||||||| || |||||||| || Sbjct 85303 TTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 85244 Query 1832 TGGAGTTGAAGTCCAGGTGTCCACTGAGATAGTTATGGGCCCCTAAAGCACGAGCCCACA 1891 |||| || || |||| ||| | | ||||| || | ||||| ||||||||| Sbjct 85243 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCCCATG 85184 Query 1892 TTGTCTTGCCTGTTC 1906 || | || ||| ||| Sbjct 85183 TTATTTTCCCTATTC 85169 >seq20728 Length=3653 Score = 77.0 bits (84), Expect = 6e-11 Identities = 110/151 (73%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 1677 TGGGATACCGCCTTTAATTTGAACAGGCTTTCCGTA-TTTGCAATTTGACTGCCAGTCCT 1735 ||| || || ||||||||||||| || |||||||| |||||| || | ||||| | | Sbjct 1441 TGGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCA-TTGGCCTGCCGTTGCG 1499 Query 1736 TTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGCTTTAGGTAGTGCGGAGGGACGTCAT 1795 | | || || | || | || | |||||| ||| || | |||||||||||||| Sbjct 1500 CT-GTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCAT 1558 Query 1796 CAATGACGTTATATTCAGCCTCATTTGAATA 1826 | |||||||||||| || |||||||| || Sbjct 1559 CGATGACGTTATATCATGCATCATTTGAGTA 1589 >seq6801 Length=49729 Score = 77.0 bits (84), Expect = 6e-11 Identities = 74/92 (80%), Gaps = 6/92 (7%) Strand=Plus/Plus Query 1642 CTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACA 1701 |||| ||||| |||| |||| || ||||| |||| || ||||||||||||||||| Sbjct 47086 CTGGACCCCT----AGGAGTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACT 47141 Query 1702 GGCTTTCCGTA-TTTGCAATTTGACTGCCAGT 1732 || || ||||| ||||| |||||||||| ||| Sbjct 47142 GGTTTGCCGTACTTTGC-ATTTGACTGCTAGT 47172 >seq3059 Length=182465 Score = 77.0 bits (84), Expect = 6e-11 Identities = 108/149 (72%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 1653 TCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGT- 1711 |||||||||||| || ||||| ||| || |||||||||||||||| || ||||||| Sbjct 20417 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 20358 Query 1712 ATTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGCT 1771 |||||| ||| | || ||||| || || || | || | || | ||||| Sbjct 20357 ATTTGC-ATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 20299 Query 1772 TTAGGTAGTGCGGAGGGACGTCATCAATG 1800 ||| || | |||||||||||| |||||| Sbjct 20298 TTAAATAATTCGGAGGGACGTCGTCAATG 20270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8548661654260