Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_010946.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq3439 107 3e-20 seq3283 102 1e-18 seq5745 96.9 6e-17 seq22495 91.5 3e-15 seq54129 87.8 3e-14 seq33 87.8 3e-14 seq953 86.0 1e-13 seq77518 84.2 4e-13 seq20728 82.4 1e-12 seq4295 78.8 2e-11 >seq3439 Length=62978 Score = 107 bits (118), Expect = 3e-20 Identities = 183/266 (69%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 1636 TCCAAGTACTCTTTATATGATGACGTTGGTCCTGGATTGCATAGGAAGATTGTCGGGATA 1695 || ||| || |||||| ||| | ||||| ||||||| || | ||| | || || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1696 CCACCTTTAATTTGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCC 1755 || ||||||||||||| ||| ||||||||||| | |||| ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1756 CCCATGAATTCTTTGAAATGCT------TTAAATAGTGGGGGTCGACGTCATCAATGACG 1809 || | ||| | || |||||| ||||||| | || ||| ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1810 TTGTACCATGCATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAA 1869 || ||||||||||| || |||| || | | | | ||| | | || | || Sbjct 810 TTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAG 751 Query 1870 TTATGTGGGCCCAATGAACGAGCCCA 1895 || |||||||| |||||||||||||| Sbjct 750 TTGTGTGGGCCTAATGAACGAGCCCA 725 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 182/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 1636 TCCAAGTACTCTTTATATGATGACGTTGGTCCTGGATTGCATAGGAAGATTGTCGGGATA 1695 |||||| || |||||| ||| ||||| |||||||| || | ||| | || || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2251 Query 1696 CCACCTTTAATTTGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCC 1755 || ||||||||||||| ||| || |||||||| | ||| ||||| | | || || Sbjct 2250 CCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2191 Query 1756 CCCATGAATTCTTTGAAATGCT------TTAAATAGTGGGGGTCGACGTCATCAATGACG 1809 || | ||| | || |||||| ||||||| | || |||||| || |||||| Sbjct 2190 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACG 2131 Query 1810 TTGTACCATGCATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAA 1869 || ||||||||||| || |||| || | | | | ||| | | || | || Sbjct 2130 TTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAG 2071 Query 1870 TTATGTGGGCCCAATGAACGAGCCCA 1895 || |||||||| |||||||||||||| Sbjct 2070 TTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq5745 Length=45059 Score = 96.9 bits (106), Expect = 6e-17 Identities = 189/277 (68%), Gaps = 13/277 (5%) Strand=Plus/Plus Query 1636 TCCAAGTACTCTTTATATGATGACGTTGGTCCT---GGATTGCATAGGAAGATTGTCGGG 1692 || ||| || ||||||| ||| | ||| || |||||||| | | ||| || Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1693 ATACCACCTTTAATTTGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGG 1752 || |||||||||||||||| ||| || |||||||| | || ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1753 GCCCCCATGAATTCTTTGAAATGCT------TTAAATA--GTGGGGGTCGACGTCATCAA 1804 || || ||||| | || |||| | ||||||| ||| || || |||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAA 43685 Query 1805 TGACGTTGTACCATGCATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACA 1864 ||||||| |||||||| ||||| || || | | ||| ||| | | || | Sbjct 43686 TGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTA 43745 Query 1865 GATAATTATGTGGGCCCAATGAACGAGCCCACATTGT 1901 |||||||||||| ||||| ||||| ||||| | ||| Sbjct 43746 TATAATTATGTGGACCCAACGAACGTGCCCAAACTGT 43782 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 170/250 (68%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 1647 TTTATATGATGACGTTGGTCCTGGATTGCATAGGAAGATTGTCGGGATACCACCTTTAAT 1706 |||||| ||| | ||||| |||||||| || | ||| | | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1707 TTGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1766 ||||| ||| ||||||||||| | ||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1767 TTTGAAATGCT------TTAAATAGTGGGGGTCGACGTCATCAATGACGTTGTACCATGC 1820 || |||||| ||||||| | || || |||||| |||||||| |||||||| Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1821 ATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGGGCC 1880 ||| || |||| || | | | | ||| | | || | || || |||||||| Sbjct 206 ATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCC 147 Query 1881 CAATGAACGA 1890 ||||||||| Sbjct 146 TAATGAACGA 137 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1663 GGTCCTGGATTGCATAGGAAGATTGTCGGGATACCACCTTTAATTTGAATTGGCTTTCCG 1722 ||||| |||||||| || | ||| | || || || ||||||||||||||||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1723 TACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAATGCT----- 1777 ||||| | ||| || |||| || || || | ||| | || | |||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1778 -TTAAATAGTGGGGGTCGACGTCATCAATGACGTTGTACCATGCATCGTT 1826 ||||||| | || ||| || || |||||||| |||||| |||| || Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq33 Length=454124 Score = 87.8 bits (96), Expect = 3e-14 Identities = 214/322 (66%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 1590 TGCATTCTTTAATGCCCACTGCTTCAGTGCTGAATTCTTATCCTCTTCCAAGTACTCTTT 1649 |||||||| ||| | |||| ||| |||||| ||| || ||| || |||| Sbjct 403380 TGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTATATCGAAGAACGCTTT 403321 Query 1650 ATATGATGACGTTGGTCCT--GGATTGCATAGGAAGATTGTCGGGATACCACCTTTAATT 1707 ||| || || ||| || |||||||| || | ||| || || || | ||||||| Sbjct 403320 ATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATT 403261 Query 1708 TGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCT 1767 |||| ||| ||||||||||| | || ||||||| | || | || | ||| | | Sbjct 403260 TGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGT 403201 Query 1768 TTGAAATGCT------TTAAATA--GTGGGGGTCGACGTCATCAATGACGTTGTACCATG 1819 | |||| | ||||||| ||| || |||||||||||||||||| ||||| | Sbjct 403200 TGATAATGATTTTTAATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACG 403143 Query 1820 CATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGGGC 1879 | ||||| ||| | | | ||| ||| | | || | ||||||||||| | Sbjct 403142 CGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGAC 403083 Query 1880 CCAATGAACGAGCCCACATTGT 1901 |||| ||||| ||||| | ||| Sbjct 403082 CCAACGAACGTGCCCAAACTGT 403061 >seq953 Length=224861 Score = 86.0 bits (94), Expect = 1e-13 Identities = 174/256 (68%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 1647 TTTATATGATGACGTTGGTCCTGGATTGCATAGGAAGATTGTCGGGATACCACCTTTAAT 1706 |||||| ||| | ||||| |||||||| | | ||| | || || || |||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1707 TTGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1766 |||||||| ||||||||||| | ||| ||||| | | || | || | ||| | Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1767 TTTGAAATGCT------TTAAATAGTGGGGGTCGACGTCATCAATGACGTTGTACCATGC 1820 || ||| || ||||||| | || |||||| || || ||||| |||||||| Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1821 ATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCA-CAGATAATTATGTGGGC 1879 ||| || |||| || | | | | ||| | | | | || | || || ||||||| Sbjct 2004 ATCATTTGAGTACGTTTTCGAATTAAAATCCATA-AATCTCATTATGTAGTTGTGTGGGC 2062 Query 1880 CCAATGAACGAGCCCA 1895 | |||||||||||||| Sbjct 2063 CTAATGAACGAGCCCA 2078 >seq77518 Length=14724 Score = 84.2 bits (92), Expect = 4e-13 Identities = 186/277 (67%), Gaps = 13/277 (5%) Strand=Plus/Minus Query 1636 TCCAAGTACTCTTTATATGATGACGTTGGTCCT---GGATTGCATAGGAAGATTGTCGGG 1692 |||||| | ||||||| ||| | ||| || |||||||| || | ||| || Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1693 ATACCACCTTTAATTTGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGG 1752 || || ||||||||||||| || ||| ||||||| | || || |||| | ||| Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1753 GCCCCCATGAATTCTTTGAAATGCT------TTAAATA--GTGGGGGTCGACGTCATCAA 1804 || || | ||| | || |||||| ||||||| ||| || ||| ||||||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGG--GACATCATCAA 2256 Query 1805 TGACGTTGTACCATGCATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACA 1864 ||||||| ||||| || ||||| ||| || | ||| ||| | | || | Sbjct 2255 TGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTA 2196 Query 1865 GATAATTATGTGGGCCCAATGAACGAGCCCACATTGT 1901 |||||||||||| ||||| |||| ||||| | ||| Sbjct 2195 TATAATTATGTGGACCCAACTAACGTGCCCAAACTGT 2159 >seq20728 Length=3653 Score = 82.4 bits (90), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 1690 GGGATACCACCTTTAATTTGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCCCTT 1749 || || || ||||||||||||| ||| ||||||||||| | ||| |||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1750 TGGGCCCCCATGAATTCTTTGAAATGCT------TTAAATAGTGGGGGTCGACGTCATCA 1803 || || || | ||| | || |||||| ||||||| | || ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1804 ATGACGTTGTACCATGCATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCA- 1862 |||||||| || |||||||| || |||| || | | | | ||||| | | | || Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATA-AATCTCAT 1619 Query 1863 CAGATAATTATGTGGGCCCAATGAACGAGCCCA 1895 | || || |||||| | |||||||||||||| Sbjct 1620 TATGTAGTTGTGTGGGACTAATGAACGAGCCCA 1652 >seq4295 Length=67413 Score = 78.8 bits (86), Expect = 2e-11 Identities = 165/244 (68%), Gaps = 13/244 (5%) Strand=Plus/Minus Query 1590 TGCATTCTTTAATGCCCACTGCTTCAGTGCTGAATTCTTATCCTCTTCCAAGTACTCTTT 1649 |||||| ||||| ||| | ||||| | | |||| |||| | ||| | | |||| Sbjct 46925 TGCATTTCCTAATGTCCATTTCTTCAAAGTTAAATTTATATCTTGTTCGAGAAAAGCTTT 46866 Query 1650 ATATGATGACGTTGGT---CCTGGATTGCATAGGAAGATTGTCGGGATACCACCTTTAAT 1706 ||| || || |||| | ||||||| | || | |||| ||||| || |||||||| Sbjct 46865 ATACGAACACTCTGGTGTCCTTGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAAT 46806 Query 1707 TTGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1766 |||| ||| || |||||||| | || | ||| | |||||| | |||| || Sbjct 46805 TTGATCTGGTTTACCGTACTTGGCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTC 46746 Query 1767 TTTGAAATGCTTT------AAATAG--TGGGGGTCGACGTCATCAATGACGTTGTACCAT 1818 ||| ||| ||| |||||| | | | | |||||||| || |||||||||||| Sbjct 46745 TTTTCAATATTTTTTCTGCAAATAGGATAGAGAT--ACGTCATCTATAACGTTGTACCAT 46688 Query 1819 GCAT 1822 |||| Sbjct 46687 GCAT 46684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8599812958100