Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_010947.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq3439 102 1e-18 seq3283 96.9 6e-17 seq22495 82.4 1e-12 seq5745 78.8 2e-11 seq77518 77.0 6e-11 seq4104 77.0 6e-11 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1656 TCCAAGTACTCTTTATATGATGATGTCGGTCCTGGATTGCAGAGGAAGATTGTAGGGATC 1715 || ||| || |||||| ||| || ||||| ||||||| || | ||| | || ||| Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1716 CCACCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCC 1775 || ||||||||||||| |||||| |||||||| | |||| ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1776 CCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGGTCGACATCATCAATGACG 1829 || | ||| | || | | |||| ||| || | || ||||||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1830 TTGTACCACGCGTCATTTGAATA 1852 || ||||| || |||||||| || Sbjct 810 TTATACCATGCATCATTTGAGTA 788 >seq3283 Length=49157 Score = 96.9 bits (106), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 1656 TCCAAGTACTCTTTATATGAT-GATGTCGGTCCTGGATTGCAGAGGAAGATTGTAGGGAT 1714 |||||| || |||||| ||| ||| ||||| |||||||| || | ||| | || || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1715 CCCACCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGC 1774 ||| ||||||||||||| ||||||||||||||| | ||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1775 CCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGGTCGACATCATCAATGAC 1828 || | ||| | || | | |||| ||| || | || ||| || || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1829 GTTGTACCACGCGTCATTTGAATA 1852 ||| ||||| || |||||||| || Sbjct 2131 GTTATACCATGCATCATTTGAGTA 2108 >seq22495 Length=567 Score = 82.4 bits (90), Expect = 1e-12 Identities = 133/192 (69%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 1667 TTTATATGATGATGTCGGTCCTGGATTGCAGAGGAAGATTGTAGGGATCCCACCTTTAAT 1726 |||||| ||| | ||||| |||||||| || | ||| | | ||||| | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1727 TTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1786 ||||| |||||| |||||||| | ||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1787 TTTAAAGTGCT------TTAGGTAGTGGGGGTCGACATCATCAATGACGTTGTACCACGC 1840 || | | |||| ||| || | || || ||||| |||||||| ||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1841 GTCATTTGAATA 1852 |||||||| || Sbjct 206 ATCATTTGAGTA 195 >seq5745 Length=45059 Score = 78.8 bits (86), Expect = 2e-11 Identities = 169/251 (67%), Gaps = 10/251 (4%) Strand=Plus/Plus Query 1686 CCTGGATTGCAGAGGAAGATTGTAGGGATCCCACCTTTAATTTGAATTGGTTTCCCGTAC 1745 || |||||||| | | ||| || ||||||||||||||||||| |||||| |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1746 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTT--TAAAGTGCTTTAGGT 1803 || | || ||||| | | ||| || || ||||| | || ||| || |||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1804 A------GTGGGGGTCGACATCATCAATGACGTTGTACCACGCGTCATTTGAATAAACCT 1857 | ||| || || |||||||||||||| ||||| ||||| || || || | Sbjct 43661 AAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTT 43718 Query 1858 TAGGGCTTAAGTCCAGGTGACCACACAAATAATTGTGTGGACCTAACGACCTAGCCCACA 1917 | | | || |||| || | |||||| |||||||| ||||| | ||||| | Sbjct 43719 TCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAA 43778 Query 1918 TGGTCTTGCCG 1928 || || ||| Sbjct 43779 CTGTTTTACCG 43789 >seq77518 Length=14724 Score = 77.0 bits (84), Expect = 6e-11 Identities = 123/175 (70%), Gaps = 10/175 (6%) Strand=Plus/Minus Query 1686 CCTGGATTGCAGAGGAAGATTGTAGGGATCCCACCTTTAATTTGAATTGGTTTCCCGTAC 1745 || |||||||| || | ||| || ||||| ||||||||||||| || ||| ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1746 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTT------ 1799 || | || || |||| | ||| || || | ||| | || | | |||||| Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1800 -AGGTAG-TGGGGGTCGACATCATCAATGACGTTGTACCACGCGTCATTTGAATA 1852 | || ||| || |||||||||||||||||| ||||||||||| || || || Sbjct 2280 AAATAAGCTGGAGG--GACATCATCAATGACGTTATACCACGCGTCGTTCGAGTA 2228 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1656 TCCAAGTACTCTTTATATGATGATGTCGGTCCTGGATTGCAGAGGAAGATTGTAGGGATC 1715 |||||| || |||||| ||| | ||||| |||||||| || | ||| | || ||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1716 CCACCTTTAATTTGAATTGGTTTCCCGTACTT 1747 || ||||||||||||| |||||| |||||||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8698918609290