Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_011024.1 Length=2771 Score E Sequences producing significant alignments: (Bits) Value seq3283 111 3e-21 seq3439 107 3e-20 seq22495 95.1 2e-16 seq953 84.2 4e-13 seq54129 82.4 1e-12 seq815 80.6 5e-12 >seq3283 Length=49157 Score = 111 bits (122), Expect = 3e-21 Identities = 170/241 (71%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 1699 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTCCCA 1758 || || |||||||| || | |||| | ||||| || ||||||||||||| || ||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1759 TACTTGGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATAAACTCTTTAAAGTGCT----- 1813 ||||| | ||| |||||| | || || || || | |||| || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1814 -TTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACT 1872 ||||||||| ||| |||||| || |||||||||||||| |||| ||| || ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACG 2106 Query 1873 TTTTG--ACTGAGGTCAAGATGGCCGCACAAATAATTATGTGGGCCTAAGGAACGGGCCC 1930 ||||| | | | || | | || | || || ||||||||||| ||||| |||| Sbjct 2105 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1931 A 1931 | Sbjct 2045 A 2045 >seq3439 Length=62978 Score = 107 bits (118), Expect = 3e-20 Identities = 179/257 (70%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 1683 TTTAAATGATGATTGTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCTCCTTTAAT 1742 |||| | ||| ||| || || ||||||| || | |||| | ||||| || |||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1743 TTGAATGGGCTTCCCATACTTGGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATAAACTC 1802 ||||| || || || ||||| | |||| ||||| | || || || || | |||| Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1803 TTTAAAGTGCT------TTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGC 1856 || | | |||| ||||||||| ||| ||| ||||| |||||||||||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1857 ATTATTGCTGTATACTTTTTG--ACTGAGGTCAAGATGGCCGCACAAATAATTATGTGGG 1914 || ||| || ||| ||||| | | | || | | || | || || |||||| Sbjct 799 ATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGG 742 Query 1915 CCTAAGGAACGGGCCCA 1931 ||||| ||||| ||||| Sbjct 741 CCTAATGAACGAGCCCA 725 >seq22495 Length=567 Score = 95.1 bits (104), Expect = 2e-16 Identities = 142/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 1683 TTTAAATGATGATTGTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCTCCTTTAAT 1742 |||| | ||| | | || || |||||||| || | |||| | |||| || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1743 TTGAATGGGCTTCCCATACTTGGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATAAACTC 1802 ||||| || || || ||||| | ||| |||||||| | || || || | |||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1803 TTTAAAGTGCT------TTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGC 1856 || | | |||| ||||||||| ||| || |||||| |||||||||||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1857 ATTATTGCTGTATACTTTTTG 1877 || ||| || ||| ||||| Sbjct 206 ATCATT--TGAGTACGTTTTG 188 >seq953 Length=224861 Score = 84.2 bits (92), Expect = 4e-13 Identities = 130/186 (70%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 1683 TTTAAATGATGATTGTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCTCCTTTAAT 1742 |||| | ||| | | || || |||||||| | | |||| | ||||| || |||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1743 TTGAATGGGCTTCCCATACTTGGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATAAACTC 1802 |||||| | || || ||||| | ||| |||||| | || || | || | |||| Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1803 TTTAAAGTGCT------TTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGC 1856 || | | | || ||||||||| ||| |||||| || || ||||||||||| || Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1857 ATTATT 1862 || ||| Sbjct 2004 ATCATT 2009 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1699 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTCCCA 1758 || || |||||||| || | |||| | ||||| || |||||||||||||| || || || Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1759 TACTTGGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATAAACTCTTTAAAGTGCT----- 1813 ||||| | ||| ||| |||| || || || | |||| || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1814 -TTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATT 1862 ||||||||| ||| ||| || || |||||||||||||| ||| ||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq815 Length=151552 Score = 80.6 bits (88), Expect = 5e-12 Identities = 129/185 (70%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 1699 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTCCCA 1758 || || |||||||| || | ||| | ||||| || |||||||||||| ||| || | Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1759 TACTTGGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATAAACTCTTTAAAGTGCT----- 1813 ||||| | ||| || ||||| | || || || | |||| || | | | || Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1814 -TTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACT 1872 ||||||||| | | |||||| || |||||||||||||| |||| ||| || ||| Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACG 85247 Query 1873 TTTTG 1877 ||||| Sbjct 85246 TTTTG 85242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8746628043600