Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_011052.2 Length=2780 Score E Sequences producing significant alignments: (Bits) Value seq3283 122 2e-24 seq490 120 5e-24 seq3439 116 6e-23 seq5745 113 8e-22 seq1993 105 1e-19 seq33 104 4e-19 seq77518 100 5e-18 seq815 80.6 5e-12 seq22495 78.8 2e-11 >seq3283 Length=49157 Score = 122 bits (134), Expect = 2e-24 Identities = 201/288 (70%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 1703 TCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1762 ||| |||||||| || | |||| | || || || ||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1763 TTTACAATTGCTTTGCCAGTCTTTCTGGGCCCCCATGAACTCTTTAAAGTGCT------T 1816 || |||| ||||| | | ||| || || | ||||| || | | |||| | Sbjct 2221 CTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1817 TAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACCTT 1876 || || | || |||||| || |||||||||||||| ||| || ||| || Sbjct 2161 TAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 2102 Query 1877 TGGACTCAAGTCCA-AATGCCCACACAGATAATTATGTGGGCCTAAGGATCTAGCCCAAA 1935 | | | || |||| || |||| | || || ||||||||||| || | |||||| Sbjct 2101 GGAATTAAAATCCATAAATCCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 2043 Query 1936 CTGTTTTACCCATTCTACTTGGGCCTTCTATAACTATACTTATGGGCC 1983 ||||||| || ||||| ||||||||| |||| || || ||||||| Sbjct 2042 CTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq490 Length=137872 Score = 120 bits (132), Expect = 5e-24 Identities = 205/292 (70%), Gaps = 14/292 (5%) Strand=Plus/Minus Query 1709 ATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTACA 1768 |||||| |||| || | |||||||||||||||||||| | |||||| | ||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1769 ATTGCTTTGCCAGTCTTTCTGGGCCCCCATGAACTCTTTAAAGTGCTTT--------AGG 1820 || ||||||| | || |||||| || | ||| | | ||||| || Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1821 TATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTG-TTGCTATACACCTTTGG 1879 | ||| || ||||||||| |||||||||||||| | ||| ||| | | |||| Sbjct 70498 TGCTGGAGG--GACGTCATCTATGACGTTATACCATG-ACTCATTGGAAAATGTCTTTCT 70442 Query 1880 ACTCAAGTCCA-AATGCCCACACAGATAATTATGTGGGCCTAAGGATCTAGCCCAAACTG 1938 | | || |||| || ||||| | || ||||||||||| || || ||||||||| | | Sbjct 70441 ATTGAAATCCATAACGCCCATAAAG-TAATTATGTGGACCCAAACTTCTAGCCCATTCAG 70383 Query 1939 TTTTACCCATTCTACTTGGGCCTTCTATAACTATACTTATGGGCCTCTCTGG 1990 | || || | |||| ||| |||||||||| || | |||||||| ||||| Sbjct 70382 TCTTCCCAAGTCTAGATGGACCTTCTATAATTAAAGACATGGGCCTATCTGG 70331 >seq3439 Length=62978 Score = 116 bits (128), Expect = 6e-23 Identities = 197/283 (70%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 1708 GATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTAC 1767 ||||||| || | |||| | || || || ||||||||||||||||| |||||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1768 AATTGCTTTGCCAGTCTTTCTGGGCCCCCATGAACTCTTTAAAGTGCTT------TAGGT 1821 ||| ||||| | | ||| || || | ||||| || | | ||||| || | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1822 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACCTTTGGAC 1881 | | || ||| ||||| |||||||||||||| ||| || ||| || | | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1882 TCAAGTCCA-AATGCCCACACAGATAATTATGTGGGCCTAAGGATCTAGCCCAAACTGTT 1940 | || |||| || |||| | || || ||||||||||| || | |||||| ||||| Sbjct 776 TAAAATCCATAAATCCCATTATG-TAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTT 718 Query 1941 TTACCCATTCTACTTGGGCCTTCTATAACTATACTTATGGGCC 1983 || || ||||| ||||||||| |||| || || ||||||| Sbjct 717 TTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 675 >seq5745 Length=45059 Score = 113 bits (124), Expect = 8e-22 Identities = 203/290 (70%), Gaps = 14/290 (5%) Strand=Plus/Plus Query 1704 CCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTA- 1762 || |||||||| | | |||| || || |||||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1763 TTTACAATTGCTTTGCCAGTCTTTCTGGGCCCCCATGAACTCTT--TAAAGTGCTTTAGG 1820 ||| || ||| | |||| | || || || ||||||| || ||| || |||| Sbjct 43601 TTTGCATTTGACT-GCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1821 TAT------TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACC 1874 || ||| || || ||||||||||||||||||||| || ||| || Sbjct 43660 TAAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1875 TTTGGACTCAAGTCCA-AATGCCCACACAGATAATTATGTGGGCCTAAGGATCTAGCCCA 1933 || | | |||| |||| || ||||| | |||||||||||| || || || | ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCATT-ATATAATTATGTGGACCCAACGAACGTGCCCA 43776 Query 1934 AACTGTTTTACCCATTCTACTTGGGCCTTCTATAACTATACTTATGGGCC 1983 |||||||||||| |||||| || | | | |||| || ||| ||| || Sbjct 43777 AACTGTTTTACCGATTCTAGAAGGTCTTGCAATAATAATGCTTTTGGACC 43826 >seq1993 Length=81530 Score = 105 bits (116), Expect = 1e-19 Identities = 204/293 (70%), Gaps = 15/293 (5%) Strand=Plus/Minus Query 1701 TCTCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCG 1760 || || |||||||| || | |||| || || || |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1761 TA-TTTACAATTGCTTTGCCAGTCTTTCTGGGCCCCCATGAACTCTTTAAAGTGCTTT-- 1817 || ||| || ||| | |||| | || || | | ||||| || | | || ||| Sbjct 74346 TACTTTGCATTTGACT-GCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1818 ----AGGTAT--TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATAC 1871 | || ||| || |||||||||||||||||||||||| || |||| || Sbjct 74287 AATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTTGTTCGATTAT 74230 Query 1872 ACCTTTGGACTCAAGTCCA-AATGCCCACACAGATAATTATGTGGGCCTAAGGATCTAGC 1930 || | | |||| |||| || ||||| | |||||||||||| || || || | | Sbjct 74229 GTTTTCGAATTCAAATCCATAAAGCCCATT-ATATAATTATGTGGACCCAACGAACGTGT 74171 Query 1931 CCAAACTGTTTTACCCATTCTACTTGGGCCTTCTATAACTATACTTATGGGCC 1983 ||||||||||||||| |||||| || ||||| |||| || || |||||| Sbjct 74170 CCAAACTGTTTTACCGATTCTAGAAGGTCCTTCAATAA-TAATTTTTTGGGCC 74119 >seq33 Length=454124 Score = 104 bits (114), Expect = 4e-19 Identities = 202/290 (70%), Gaps = 15/290 (5%) Strand=Plus/Minus Query 1704 CCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTA- 1762 || |||||||| || | |||| || || || | ||||||||||||||| |||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1763 TTTACAATTGCTTTGCCAGTCTTTCTGGGCCCCCATGAACTCTT--TAAAGTGCTTTAGG 1820 ||| || ||| ||||||| ||| | || | ||||| || ||| | |||| Sbjct 403242 TTTGCATTTG-ACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1821 TA------TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACC 1874 || ||| || |||||||||||||||||||||||| || ||| || Sbjct 403183 TAAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 403126 Query 1875 TTTGGACTCAAGTCCA-AATGCCCACACAGATAATTATGTGGGCCTAAGGATCTAGCCCA 1933 | | | |||| |||| || ||||| | ||||||||||| || || || | ||||| Sbjct 403125 CTCGAATTCAAATCCATAAAGCCCA-TTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 Query 1934 AACTGTTTTACCCATTCTACTTGGGCCTTCTATAACTATACTTATGGGCC 1983 ||||||||| | |||||| || ||||| |||| || ||| |||||| Sbjct 403066 AACTGTTTT-TCAATTCTAGAAGGTCCTTCAATAATAATGCTTTTGGGCC 403018 >seq77518 Length=14724 Score = 100 bits (110), Expect = 5e-18 Identities = 200/289 (69%), Gaps = 17/289 (6%) Strand=Plus/Minus Query 1704 CCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTA- 1762 || |||||||| || | |||| || || || |||||||||||||||| ||| |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1763 TTTACAATTGCTTTGCCAGTCTTTCTGGGCCCCCATGAACTCTTTAAAGTGCTTT----- 1817 ||| || ||| | | |||| || || || | ||||| || | | |||||| Sbjct 2340 TTTGCATTTGACT-GTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1818 -AGGTAT--TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACC 1874 | || ||| || ||| |||||||||||||||||||| || ||| || Sbjct 2281 TAAATAAGCTGGAGG--GACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 2224 Query 1875 TTTGGACTCAAGTCCA-AATGCCCACACAGATAATTATGTGGGCCTAAGGATCTAGCCCA 1933 || | |||| |||| || ||||| | |||||||||||| || || | | ||||| Sbjct 2223 TTCAAATTCAAATCCATAAAGCCCATT-ATATAATTATGTGGACCCAACTAACGTGCCCA 2165 Query 1934 AACTGTTTTACCCATTCTACTTGGGCCTTCTATAACTATACTTATGGGC 1982 |||||||||||| |||||| || ||||| |||| || || ||||| Sbjct 2164 AACTGTTTTACCGATTCTA---GGTCCTTCAATAATAATGTTTTTGGGC 2119 >seq815 Length=151552 Score = 80.6 bits (88), Expect = 5e-12 Identities = 194/289 (67%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 1703 TCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1762 ||| |||||||| || | ||| | || || || |||||||||||| | || ||| |||| Sbjct 85422 TCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCGTA 85363 Query 1763 -TTTACAATTGCTTTGCCAGTCTTTCTGGGCCCCCATGAACTCTTTAAAGTGCT------ 1815 ||| || | || || ||||| ||| || || | ||||| || | | | || Sbjct 85362 CTTTGCATTGGCCTT-CCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAAA 85304 Query 1816 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACCT 1875 ||| || | | |||||| || |||||||||||||| ||| || ||| | Sbjct 85303 TTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 85244 Query 1876 TTGGACTCAAGTCCA-AATGCCCACACAGATAATTATGTGGGCCTAAGGATCTAGCCCAA 1934 | | | | || |||| || |||| | || || |||| |||||| | | |||||| Sbjct 85243 TGGAATTAAAATCCATAAATCCCA-TTATGTAGTTGTGTGTGCCTAATAAACGAGCCCAT 85185 Query 1935 ACTGTTTTACCCATTCTACTTGGGCCTTCTATAACTATACTTATGGGCC 1983 | |||| || ||||| ||||||||| |||| || || ||||||| Sbjct 85184 GTTATTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 85136 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/163 (71%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1703 TCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1762 ||| |||||||| || | |||| | | || || | ||||||||||||||| |||||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1763 TTTACAATTGCTTTGCCAGTCTTTCTGGGCCCCCATGAACTCTTTAAAGTGCT------T 1816 || |||| ||||||| ||| || || | ||||| || | | |||| | Sbjct 308 CTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1817 TAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCA 1859 || || | || || |||||| |||||||||||||| ||| Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCA 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8775399846375