Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_011096.1 Length=2794 Score E Sequences producing significant alignments: (Bits) Value seq3439 104 4e-19 seq3283 104 4e-19 seq22495 91.5 3e-15 seq5745 87.8 3e-14 seq953 86.0 1e-13 seq54129 84.2 4e-13 seq815 78.8 2e-11 >seq3439 Length=62978 Score = 104 bits (114), Expect = 4e-19 Identities = 138/192 (72%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 1702 TTATATGATGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATT 1761 ||||| ||| || || || ||||||| || | |||| | ||||| || ||||||||| Sbjct 978 TTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATT 919 Query 1762 TGAATGGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCT 1821 |||| || || |||||||| | |||| ||||| | || || || || | ||||| | Sbjct 918 TGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGT 859 Query 1822 TTAAAGTGTT------TGAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGCA 1875 | | | || | | | ||| | ||| ||| ||||| |||||||||||||| ||| Sbjct 858 TGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCA 799 Query 1876 TCATTTGAATAC 1887 |||||||| ||| Sbjct 798 TCATTTGAGTAC 787 >seq3283 Length=49157 Score = 104 bits (114), Expect = 4e-19 Identities = 129/177 (73%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 1717 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1776 || || |||||||| || | |||| | ||||| || ||||||||||||| || |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1777 TACTTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1831 ||||| | ||| ||||| | || || || || | ||||| || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1832 -TGAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATAC 1887 | | ||| | ||| |||||| || |||||||||||||| ||||||||||| ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTAC 2107 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 126/177 (71%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 1717 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1776 || || |||||||| || | |||| | |||| || | ||||||||||| || || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1777 TACTTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1831 ||||| | ||| ||||||| | || || || | ||||| || | | || | Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1832 -TGAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATAC 1887 | | ||| | ||| || |||||| |||||||||||||| ||||||||||| ||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTAC 194 >seq5745 Length=45059 Score = 87.8 bits (96), Expect = 3e-14 Identities = 170/249 (68%), Gaps = 8/249 (3%) Strand=Plus/Plus Query 1720 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTAC 1779 || |||||||| | | |||| ||||| |||||||||||||||| || || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1780 TTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTT------TG 1833 || | || ||||| | | ||| || || ||||||| || | | |||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1834 AGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACCTTT 1893 | ||| ||| || ||||||||||||||||||||| || || || || || || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1894 GGACTCAGGTCTA-GATGCCCACACAAATAATTGTGTGGACCTAGTGACCTGGCCCACAT 1952 | | ||| || | | ||||| | |||||| |||||||| | || | ||||| | Sbjct 43721 GAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCAAAC 43779 Query 1953 TGTCTTGCC 1961 ||| || || Sbjct 43780 TGTTTTACC 43788 >seq953 Length=224861 Score = 86.0 bits (94), Expect = 1e-13 Identities = 127/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 1717 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1776 || || |||||||| | | |||| | ||||| || |||||||||||||| | || ||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1777 TACTTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTT--TAA-AGTGTT-- 1831 ||||| | ||| ||||| | || || | || | ||||| || ||| | | || Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1832 -TGAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATAC 1887 | | ||| | ||| |||||| || || ||||||||||| ||||||||||| ||| Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTAC 2016 >seq54129 Length=2260 Score = 84.2 bits (92), Expect = 4e-13 Identities = 126/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1717 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1776 || || |||||||| || | |||| | ||||| || |||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1777 TACTTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTT--TAAAG--TGTT- 1831 ||||| | ||| || |||| || || || | ||||| || ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1832 -TGAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATA 1886 | | ||| | ||| ||| || || |||||||||||||| |||||||||| || Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 >seq815 Length=151552 Score = 78.8 bits (86), Expect = 2e-11 Identities = 133/192 (69%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 1702 TTATATGATGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATT 1761 ||||| ||| || || || |||||||| || | ||| | ||||| || ||||||||| Sbjct 85438 TTATAGGATAATCA-GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATT 85380 Query 1762 TGAATGGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCT 1821 ||| ||| || ||||||| | ||| | ||||| | || || || | ||||| | Sbjct 85379 TGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTAT 85320 Query 1822 TTAAAGTGTTTG------AGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGCA 1875 | | | | || | ||| | || |||||| || |||||||||||||| ||| Sbjct 85319 TGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCA 85260 Query 1876 TCATTTGAATAC 1887 |||||||| ||| Sbjct 85259 TCATTTGAGTAC 85248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8820155984025