Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_011135.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq3283 123 4e-25 seq22495 111 3e-21 seq77518 105 1e-19 seq5745 105 1e-19 seq3439 105 1e-19 seq33 104 4e-19 seq442 98.7 2e-17 seq4104 96.9 6e-17 seq1993 96.9 6e-17 seq6801 95.1 2e-16 seq30129 93.3 7e-16 seq35612 91.5 3e-15 seq3059 89.7 9e-15 seq80468 87.8 3e-14 seq54129 87.8 3e-14 seq953 86.0 1e-13 seq815 84.2 4e-13 seq5493 80.6 5e-12 >seq3283 Length=49157 Score = 123 bits (136), Expect = 4e-25 Identities = 146/198 (74%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1666 ATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1725 |||||||||| ||||||| || ||||| |||||||| || | |||| | ||||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1726 TCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGC 1785 |||||||||||||||||||| ||||||||||||| ||| | ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1786 CCCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGAC 1839 || | ||| | || | | |||| ||| ||| | || ||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1840 GTTATACCAGGCATCATT 1857 ||||||||| |||||||| Sbjct 2131 GTTATACCATGCATCATT 2114 >seq22495 Length=567 Score = 111 bits (122), Expect = 3e-21 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1666 ATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1725 ||| ||||| ||||||| ||| ||||| |||||||| || | |||| | |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1726 TCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGC 1785 |||| ||||||||||||||| || |||||||||| ||| | ||||||| | || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1786 CCCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGAC 1839 || | ||| | || | | |||| ||| ||| | || | |||||| ||||| Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1840 GTTATACCAGGCATCATT 1857 ||||||||| |||||||| Sbjct 218 GTTATACCATGCATCATT 201 >seq77518 Length=14724 Score = 105 bits (116), Expect = 1e-19 Identities = 155/217 (71%), Gaps = 13/217 (6%) Strand=Plus/Minus Query 1652 GAATTCTTATCTTCATCCAAGAACTCTTTATAGCTGGAATTTGGTCCT---GGATTGCAG 1708 ||||| |||| ||||||||| ||||||| ||| ||| || |||||||| Sbjct 2448 GAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAA 2389 Query 1709 AGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGAT 1768 || | |||| ||||| ||||||||||||||||||| || ||||||||| |||||| Sbjct 2388 AGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGAC 2329 Query 1769 TGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGATA--GTGGG 1820 || |||| | ||| || || | ||| | || | | |||| ||| ||| ||| Sbjct 2328 TGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGA 2269 Query 1821 GGTCTACGTCATCAATGACGTTATACCAGGCATCATT 1857 || || |||||||||||||||||||| || || || Sbjct 2268 GG--GACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq5745 Length=45059 Score = 105 bits (116), Expect = 1e-19 Identities = 155/217 (71%), Gaps = 13/217 (6%) Strand=Plus/Plus Query 1652 GAATTCTTATCTTCATCCAAGAACTCTTTATAGCTGGAATTTGGTCCT---GGATTGCAG 1708 ||||| |||| ||| |||||| ||||||| ||| ||| || |||||||| Sbjct 43493 GAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAA 43552 Query 1709 AGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGAT 1768 | | |||| ||||| || ||||||||||||||||| || |||||||||| |||||| Sbjct 43553 ATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGAC 43612 Query 1769 TGCCAGTCCCTTTGGGCCCCCATGAATTCTT--TAAAGTGCTTTAGATA------GTGGG 1820 ||||| | | ||| || || ||||| | || ||| || |||| || ||| Sbjct 43613 TGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGA 43672 Query 1821 GGTCTACGTCATCAATGACGTTATACCAGGCATCATT 1857 || | ||||||||||||||||||||| || || || Sbjct 43673 GG--GATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq3439 Length=62978 Score = 105 bits (116), Expect = 1e-19 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1666 ATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1725 ||| |||||| ||||||| | | ||||| ||||||| || | |||| | ||||| Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1726 TCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGC 1785 |||||||||||||||||||| || |||||||||| || | ||||| | | || || Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1786 CCCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGAC 1839 || | ||| | || | | |||| ||| ||| | || || ||||| ||||| Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1840 GTTATACCAGGCATCATT 1857 ||||||||| |||||||| Sbjct 811 GTTATACCATGCATCATT 794 >seq33 Length=454124 Score = 104 bits (114), Expect = 4e-19 Identities = 154/216 (71%), Gaps = 12/216 (6%) Strand=Plus/Minus Query 1652 GAATTCTTATCTTCATCCAAGAACTCTTTATAGCTGGAATTTGGTCCT--GGATTGCAGA 1709 ||||| |||| ||| |||||| ||||||| | | ||| || |||||||| | Sbjct 403349 GAATTTGAATCTATATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAA 403290 Query 1710 GGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATT 1769 | | |||| ||||| |||| ||||||||||||||| || |||||||||| |||||| | Sbjct 403289 GCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACT 403230 Query 1770 GCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGATA--GTGGGG 1821 |||||| | || | || | ||| | || | | || | ||| ||| ||| | Sbjct 403229 GCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAG 403170 Query 1822 GTCTACGTCATCAATGACGTTATACCAGGCATCATT 1857 | ||||||||||||||||||||||| || || || Sbjct 403169 G--GACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq442 Length=237535 Score = 98.7 bits (108), Expect = 2e-17 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1652 GAATTCTTATCTTCATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGG 1711 ||||| |||| ||||||||| ||||||| |||| ||||| |||||||| || Sbjct 22736 GAATTGGAATCTAAATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGT 22795 Query 1712 AAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGC 1771 |||| | ||||| |||||||||||||||||| || |||||||||| ||| | ||| Sbjct 22796 TCGATACTTGGAATCTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGC 22855 Query 1772 CAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTT 1810 ||| | ||| || || | ||| | || | | |||||| Sbjct 22856 TAGTGTCGTTGTGCGCCTACGAACTGTTAATAATGCTTT 22894 >seq4104 Length=64936 Score = 96.9 bits (106), Expect = 6e-17 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1666 ATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1725 |||||||||| ||||||| ||| ||||| |||||||| || | |||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1726 TCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTAT 1763 |||||||||||||||||||| || |||||||||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq1993 Length=81530 Score = 96.9 bits (106), Expect = 6e-17 Identities = 120/163 (74%), Gaps = 10/163 (6%) Strand=Plus/Minus Query 1697 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1756 || |||||||| || | |||| ||||| ||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1757 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1810 |||| |||||| ||||| | | ||| || | | ||| | || | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1811 AGATA--GTGGGGGTCTACGTCATCAATGACGTTATACCAGGC 1851 | ||| ||| || ||||||||||||||||||||||| || Sbjct 74283 AAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGC 74243 >seq6801 Length=49729 Score = 95.1 bits (104), Expect = 2e-16 Identities = 89/113 (79%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1666 ATCCAAGAACTCTTTATAGCTGGAATTTGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1722 |||||||||| |||||||| ||| ||| || ||| |||| || | |||| || Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119 Query 1723 AATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGT 1775 ||| |||||||||||||||||||| || |||||||||| |||||| ||| ||| Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 >seq30129 Length=3650 Score = 93.3 bits (102), Expect = 7e-16 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1666 ATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1725 |||||||||| ||| ||| ||| ||||| |||||||| || | |||| | ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1726 TCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGC 1785 |||||||||||||||||| | || |||||||||| ||| | ||||| | | || || Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2462 Query 1786 CCCCATGAATTCTTTAAAGTGCTT 1809 || | ||| | || | | ||||| Sbjct 2463 GCCTACGAACTGTTGATAATGCTT 2486 >seq35612 Length=1588 Score = 91.5 bits (100), Expect = 3e-15 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1666 ATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1725 ||||||||| ||||||| ||| ||||| |||||||| || | |||| | ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1726 TCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCA 1773 |||||||||||||||||||| || |||||||||| || | ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq3059 Length=182465 Score = 89.7 bits (98), Expect = 9e-15 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1666 ATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1725 |||||||||| ||||| | ||| ||||| |||||||| || | |||| | ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1726 TCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGC 1785 |||||||||||||||| ||| || ||||| |||| ||| | | ||||| | || || Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGC 20328 Query 1786 CCCCATGAATTCTTTAAAGTGCTT 1809 || | ||| | || | | ||||| Sbjct 20327 GCCTACGAACTGTTGATAATGCTT 20304 >seq80468 Length=4946 Score = 87.8 bits (96), Expect = 3e-14 Identities = 140/200 (70%), Gaps = 11/200 (6%) Strand=Plus/Plus Query 1666 ATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1725 || |||||| ||||||| ||| ||||| ||||||| || | |||| | ||||| Sbjct 4238 ATTCAAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 4297 Query 1726 TCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCA--GTCCCTTTGG 1783 |||||||||||| ||||| || || |||||||||||||| | | ||| || | || Sbjct 4298 TCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATTGGCCTACCATTGTGC---TGT 4354 Query 1784 GCCCCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATG 1837 || || | ||| | || | | |||| ||| ||| | | ||||| | ||| Sbjct 4355 GCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTTGAAGGGACGTCGTTGATG 4414 Query 1838 ACGTTATACCAGGCATCATT 1857 ||||||||||| |||| ||| Sbjct 4415 ACGTTATACCATGCATAATT 4434 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1694 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCG 1753 ||||| |||||||| || | |||| | ||||| |||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1754 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1808 ||||||| ||| | || |||| || || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1809 -TTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAGGCATCATT 1857 ||| ||| | || || || || |||||||||||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq953 Length=224861 Score = 86.0 bits (94), Expect = 1e-13 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 1652 GAATTCTTATCTTCATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGG 1711 ||||| |||| ||| ||||| ||||||| ||| ||||| |||||||| | Sbjct 1798 GAATTGGAATCTAAATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAAT 1857 Query 1712 AAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGC 1771 | |||| | ||||| |||||||||||||||| || || |||||||||| ||| ||| Sbjct 1858 ACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGC 1917 Query 1772 CAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTT------AGATAGTGGGGGTCT 1825 || | | || | || | ||| | || | | | |||| | ||| | || Sbjct 1918 CAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGG 1977 Query 1826 ACGTCATCAATGACGTTATACCAGGCATCATT 1857 ||||| || || ||||||||||| |||||||| Sbjct 1978 ACGTCGTCGATAACGTTATACCATGCATCATT 2009 >seq815 Length=151552 Score = 84.2 bits (92), Expect = 4e-13 Identities = 138/198 (70%), Gaps = 7/198 (4%) Strand=Plus/Minus Query 1666 ATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1725 || ||| ||| ||||||| ||| ||||| |||||||| || | ||| | ||||| Sbjct 85451 ATTCAATAACGTTTTATAGGAT-AATCAGGTCCAGGATTGCAAAGTACAATACTTGGAAT 85393 Query 1726 TCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGC 1785 ||||||||||||||| | || || ||||||||| ||| | | ||||| | || || Sbjct 85392 CCCGCCTTTAATTTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGC 85333 Query 1786 CCCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGAC 1839 || | ||| | || | | | || ||| ||| | | ||||| || ||||| Sbjct 85332 GCCTACGAACTATTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGAC 85273 Query 1840 GTTATACCAGGCATCATT 1857 ||||||||| |||||||| Sbjct 85272 GTTATACCATGCATCATT 85255 >seq5493 Length=32325 Score = 80.6 bits (88), Expect = 5e-12 Identities = 104/139 (75%), Gaps = 5/139 (4%) Strand=Plus/Minus Query 1724 ATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGG 1783 ||||| | ||||||||||||||| || |||||||| |||||||||||||| ||| Sbjct 31535 ATTCCACTTTTAATTTGAACTGGTTTACCGTACTTCACATTTGATTGCCAGTTGTATTGA 31476 Query 1784 GCCCCCATGAATTCTTTAAAG-TGCTTT--AGATA-GTGGGGGTCTACGTCATCAATGAC 1839 | || | | ||||| || | |||| ||||| || || | |||||||||||||| Sbjct 31475 GACCTAAGTAGCTCTTTCCAGCTTCTTTGCAGATATGTCGGTG-ATACGTCATCAATGAT 31417 Query 1840 GTTATACCAGGCATCATTA 1858 ||| ||||| ||| |||| Sbjct 31416 GTTGTACCATGCACGATTA 31398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8733840575700