Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_011268.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq3439 98.7 2e-17 seq3283 84.2 4e-13 seq54129 82.4 1e-12 seq22495 78.8 2e-11 >seq3439 Length=62978 Score = 98.7 bits (108), Expect = 2e-17 Identities = 176/255 (69%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 1682 GGCCCAGGATTGCAGAGGAAGATTGTCGGAATGCCTCCTTTAACTTGAACGGGCTTTCCA 1741 || ||| ||||||| || | ||| | ||||| || ||||||| |||||| || ||||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1742 TACTTTGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTGA-AGTGCTTG-- 1798 ||||||| |||| ||||| | || ||| || || | || | |||| | ||||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG-TTGATAATGCTTCTT 845 Query 1799 ----AGATAATGCGGATCAACATCATCAATGACGTTATACCATACGTCATTACTATAGAC 1854 | ||||| |||| |||||||| ||||||||||||||| | ||||| || Sbjct 844 AATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGT 785 Query 1855 TCTTGGACTGAGATCCAAGTGACCGCATAAATAATTGTGTGGGCCGAGAGACCGAGCCCA 1914 | | | | | | ||||| || || || ||||||||||| | || |||||||| Sbjct 784 TTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 Query 1915 CATTGTCTTCCCAAT 1929 ||| ||||| || Sbjct 724 TGCTGTTTTCCCTAT 710 >seq3283 Length=49157 Score = 84.2 bits (92), Expect = 4e-13 Identities = 173/255 (68%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 1682 GGCCCAGGATTGCAGAGGAAGATTGTCGGAATGCCTCCTTTAACTTGAACGGGCTTTCCA 1741 || ||||||||||| || | ||| | ||||| || ||||||| |||||| || || || Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1742 TACTTTGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTGA-AGTGCT---- 1796 ||||||| ||| ||||| | || ||| || || | || | |||| | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCTT 2165 Query 1797 --TGAGATAATGCGGATCAACATCATCAATGACGTTATACCATACGTCATTACTATAGAC 1854 | | ||||| |||| || || || ||||||||||||||| | ||||| || Sbjct 2164 AATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGT 2105 Query 1855 TCTTGGACTGAGATCCAAGTGACCGCATAAATAATTGTGTGGGCCGAGAGACCGAGCCCA 1914 | | | | | | ||||| || || || ||||||||||| | || |||||||| Sbjct 2104 TTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 Query 1915 CATTGTCTTCCCAAT 1929 ||| ||||| || Sbjct 2044 TGCTGTTTTCCCTAT 2030 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1682 GGCCCAGGATTGCAGAGGAAGATTGTCGGAATGCCTCCTTTAACTTGAACGGGCTTTCCA 1741 || ||||||||||| || | ||| | ||||| || ||||||| ||||| || ||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1742 TACTTTGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTGAAGTGCT----- 1796 ||||||| ||| || |||| ||| || || | || | | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1797 -TGAGATAATGCGGATCAACATCATCAATGACGTTATACCATACGTCATT 1845 | | ||||| |||| ||||| || ||||||||||||||||| ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 131/187 (70%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 1666 TTTATAGCTCGAATGGGGCCCAGGATTGCAGAGGAAGATTGTCGGAATGCCTCCTTTAAC 1725 ||||||| ||| || ||||||||||| || | ||| | |||| || | ||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1726 TTGAACGGGCTTTCCATACTTTGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATAAATTC 1785 |||||| || ||||| ||||||| ||| ||||||| | ||| || || | || | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACT- 268 Query 1786 CTTGA-AGTGCT------TGAGATAATGCGGATCAACATCATCAATGACGTTATACCATA 1838 |||| | |||| | | ||||| |||| | ||||| ||||||||||||||| Sbjct 267 GTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATG 208 Query 1839 CGTCATT 1845 | ||||| Sbjct 207 CATCATT 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8660555131410