Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_011309.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq3439 91.5 3e-15 seq3283 77.0 6e-11 >seq3439 Length=62978 Score = 91.5 bits (100), Expect = 3e-15 Identities = 124/171 (73%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 1688 GGCCCAGGATTGCAGAGGAAGATTGTCGGAATGCCCCCTTTAATTTGAACGGGCTTTCCA 1747 || ||| ||||||| || | ||| | ||||| || |||||||||||||| || ||||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1748 TACTTGGTGTTACTTTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTGA-AGTGCT---- 1802 ||||| | ||| ||||| | || ||| || || | || | |||| | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCTT 845 Query 1803 --TGAGATAATGCGGATCAACATCATCAATGACGTTATACCATACGTCATT 1851 | | ||||| |||| |||||||| ||||||||||||||| | ||||| Sbjct 844 AATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq3283 Length=49157 Score = 77.0 bits (84), Expect = 6e-11 Identities = 121/171 (71%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 1688 GGCCCAGGATTGCAGAGGAAGATTGTCGGAATGCCCCCTTTAATTTGAACGGGCTTTCCA 1747 || ||||||||||| || | ||| | ||||| || |||||||||||||| || || || Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1748 TACTTGGTGTTACTTTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTGA-AGTGCT---- 1802 ||||| | || ||||| | || ||| || || | || | |||| | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCTT 2165 Query 1803 --TGAGATAATGCGGATCAACATCATCAATGACGTTATACCATACGTCATT 1851 | | ||||| |||| || || || ||||||||||||||| | ||||| Sbjct 2164 AATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8705312522270