Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_011346.1 Length=2776 Score E Sequences producing significant alignments: (Bits) Value seq3439 102 1e-18 seq22495 96.9 6e-17 seq3283 96.9 6e-17 seq77518 91.5 3e-15 seq5745 91.5 3e-15 seq33 91.5 3e-15 seq3059 82.4 1e-12 seq1993 82.4 1e-12 seq54129 80.6 5e-12 seq35612 77.0 6e-11 seq30129 77.0 6e-11 seq4104 77.0 6e-11 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 120/163 (74%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1687 GATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCGTATTTTG 1746 ||||||| || | |||| | |||||||| ||||||||||||||||| |||||||| |||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1747 TGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTC------AGAT 1800 |||| ||||| | | || || || | ||| | || | | |||||| | || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1801 AATGCGGATCAACGTCATCAATGACGTTGTACCACGCGTCGTT 1843 ||| |||| || ||||| |||||||| ||||| || || || Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1680 GGACCTGGATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCG 1739 || || |||||||| || | |||| | ||||||| | ||||||||||||||| |||||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1740 TATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTC--- 1796 || |||| ||| ||||||| | || || || | ||| | || | | |||||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1797 ---AGATAATGCGGATCAACGTCATCAATGACGTTGTACCACGCGTCGTT 1843 | ||||| |||| | |||||| |||||||| ||||| || || || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq3283 Length=49157 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1680 GGACCTGGATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCG 1739 || || |||||||| || | |||| | |||||||| ||||||||||||||||| || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1740 TATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTC--- 1796 || |||| ||| ||||| | | || || || | ||| | || | | |||||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1797 ---AGATAATGCGGATCAACGTCATCAATGACGTTGTACCACGCGTCGTT 1843 | ||||| |||| ||||| || |||||||| ||||| || || || Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq77518 Length=14724 Score = 91.5 bits (100), Expect = 3e-15 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1683 CCTGGATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCGTAT 1742 || |||||||| || | |||| |||||||| |||||||||||||||| ||| |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1743 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TC 1796 |||| || || |||| | ||| || || | ||| | || | | |||| | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1797 AGATAATGCGGATCAACGTCATCAATGACGTTGTACCACGCGTCGTT 1843 | |||| ||| || |||||||||||||| |||||||||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq5745 Length=45059 Score = 91.5 bits (100), Expect = 3e-15 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1683 CCTGGATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCGTAT 1742 || |||||||| | | |||| |||||||||||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1743 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TC 1796 |||| || ||||| | | ||| || || ||||| | || | | || | | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1797 AGATAATGCGGATCAACGTCATCAATGACGTTGTACCACGCGTCGTT 1843 | |||| ||| | ||||||||||||||| ||||| |||||||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq33 Length=454124 Score = 91.5 bits (100), Expect = 3e-15 Identities = 125/174 (72%), Gaps = 8/174 (5%) Strand=Plus/Minus Query 1678 CTGGACCT--GGATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTT 1735 ||||||| |||||||| || | |||| |||||||| | ||||||||||||||| || Sbjct 403309 CTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTT 403250 Query 1736 TCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT- 1794 |||||| |||| || ||||||| | || | || | ||| | || | | || | Sbjct 403249 TCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATT 403190 Query 1795 -----TCAGATAATGCGGATCAACGTCATCAATGACGTTGTACCACGCGTCGTT 1843 | | |||| ||| ||||||||||||||||| |||||||||||||| Sbjct 403189 TTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq3059 Length=182465 Score = 82.4 bits (90), Expect = 1e-12 Identities = 108/150 (72%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 1680 GGACCTGGATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCG 1739 || || |||||||| || | |||| | |||||||| ||||||||||||| ||| |||||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1740 TATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTC--- 1796 || |||| ||| | ||||| | || || || | ||| | || | | |||||| Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 20300 Query 1797 ---AGATAATGCGGATCAACGTCATCAATG 1823 | ||||| |||| ||||| |||||| Sbjct 20299 ATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq1993 Length=81530 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1683 CCTGGATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCGTAT 1742 || |||||||| || | |||| |||||||| |||||||||||||||| || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1743 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TC 1796 |||| || ||||| | | ||| || | | ||| | || | | || | | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1797 AGATAATGCGGATCAACGTCATCAATGACGTTGTACCACGCGTCGTT 1843 | |||| ||| ||||||||||||||||| |||||||||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 114/161 (71%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1680 GGACCTGGATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCG 1739 || || |||||||| || | |||| | |||||||| ||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1740 TATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTC--- 1796 || |||| ||| || |||| || || || | ||| | || | |||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1797 ---AGATAATGCGGATCAACGTCATCAATGACGTTGTACCA 1834 | ||||| |||| || || || |||||||| ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCA 2100 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1680 GGACCTGGATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCG 1739 || || |||||||| || | |||| | ||||| || ||||||||||||||||| |||||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1740 TATTTTGTGTTGCTTTGCCA 1759 || |||| |||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq30129 Length=3650 Score = 77.0 bits (84), Expect = 6e-11 Identities = 87/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1680 GGACCTGGATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCG 1739 || || |||||||| || | |||| | |||||||| ||||||||||||||| | |||||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1740 TATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTC 1796 || |||| ||| ||||| | | || || || | ||| | || | | |||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTC 2487 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1680 GGACCTGGATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCG 1739 || || |||||||| || | |||| | |||||||| ||||||||||||||||| |||||| Sbjct 20830 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 20771 Query 1740 TATTTTG 1746 || |||| Sbjct 20770 TACTTTG 20764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8762612378475