Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_011583.1 Length=2797 Score E Sequences producing significant alignments: (Bits) Value seq3283 87.8 3e-14 seq5745 86.0 1e-13 seq54129 77.0 6e-11 >seq3283 Length=49157 Score = 87.8 bits (96), Expect = 3e-14 Identities = 181/267 (68%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1698 TCCAGAAACTCTTTATATGAT-GATGTTGGGCCCGGATTGCAGAGGAAGATAGTGGGAAT 1756 |||| ||| |||||| ||| ||| || || |||||||| || | |||| | ||||| Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1757 GCCGCCTTTAATTTGAATCGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTTTGGGC 1816 |||||||||||||||| || ||||||||||||| |||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1817 CCCCATGAATTCTTTGAAGTGTT------TGAGGTAGTGGGGGTCGACGTCATCAATGAC 1870 || | ||| | || | || | | | || | || |||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1871 GTTGTACCAGGCGTCGTTGCTGTAGACCTTTGGACTAAGATCCAGGTGTCCACACAAGTA 1930 ||| ||||| || || || ||| || | | ||| ||||| ||| | ||| Sbjct 2131 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 2072 Query 1931 GTTGTGTGGACCCAAAGAGCGGGCCCA 1957 ||||||||| || || || || ||||| Sbjct 2071 GTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq5745 Length=45059 Score = 86.0 bits (94), Expect = 1e-13 Identities = 138/196 (70%), Gaps = 13/196 (7%) Strand=Plus/Plus Query 1704 AACTCTTTATATGATGATGTTGGGCCC---GGATTGCAGAGGAAGATAGTGGGAATGCCG 1760 ||| ||||||| ||| | ||| ||| |||||||| | | |||| ||||| || Sbjct 43514 AACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCA 43573 Query 1761 CCTTTAATTTGAATCGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCC 1820 ||||||||||||| || || |||||||||| ||| ||||| | | ||| || || Sbjct 43574 CCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCT 43633 Query 1821 ATGAATTCTT--TGAAGTGTTTGAGGTA------GTGGGGGTCGACGTCATCAATGACGT 1872 ||||| | || | | || ||| | || ||| || || |||||||||||||| Sbjct 43634 ATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAATGACGT 43691 Query 1873 TGTACCAGGCGTCGTT 1888 | ||||| |||||||| Sbjct 43692 TATACCATGCGTCGTT 43707 >seq54129 Length=2260 Score = 77.0 bits (84), Expect = 6e-11 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 1725 GGGCCCGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATCGGCTTCCCG 1784 || || |||||||| || | |||| | ||||| ||||||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1785 TACTTTGTATTG 1796 ||||||| |||| Sbjct 2200 TACTTTGCATTG 2189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8829746584950