Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_011804.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq33 114 2e-22 seq5745 109 1e-20 seq77518 104 4e-19 seq3283 104 4e-19 seq1993 104 4e-19 seq3439 98.7 2e-17 seq22495 91.5 3e-15 seq6801 87.8 3e-14 seq35612 86.0 1e-13 seq30129 82.4 1e-12 seq4104 82.4 1e-12 seq54129 80.6 5e-12 seq3059 77.0 6e-11 >seq33 Length=454124 Score = 114 bits (126), Expect = 2e-22 Identities = 145/194 (75%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 1649 gAACTCTTTATAA--CTGCTGTGGGGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCG 1706 |||| |||||||| | || ||| ||||||||||| || | ||| ||| |||||| Sbjct 403329 GAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCG 403270 Query 1707 CCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCC 1766 | ||||||||||||||| || |||||||||| || || ||||||| | || | || Sbjct 403269 CTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCT 403210 Query 1767 ATAAACTCTT--TAAAG-TGTTTGAGGAAAT--GC-GGGTCGACGTCATCAATGACGTTA 1820 | |||| || ||| | | ||| | |||| || || ||||||||||||||||||| Sbjct 403209 ACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTA 403150 Query 1821 TACCAGGCGTCGTT 1834 ||||| |||||||| Sbjct 403149 TACCACGCGTCGTT 403136 >seq5745 Length=45059 Score = 109 bits (120), Expect = 1e-20 Identities = 127/167 (76%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1674 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1733 ||||||||||| | | ||| ||| ||||| ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1734 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATAAACTCTT--TAAAG-TGTTTGAGG 1790 |||| || || ||||| | | ||| || || || |||| || ||| | | ||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1791 AAAT--GC-GGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1834 |||| || || || ||||||||||||||||||||| |||||||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq77518 Length=14724 Score = 104 bits (114), Expect = 4e-19 Identities = 126/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1674 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1733 ||||||||||| || | ||| ||| |||||||||||||||||||||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1734 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATAAACTCTT--TAAAG-TGTTTGAGG 1790 |||| || || || |||| | ||| || || | |||| || ||| | | ||| | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1791 AAAT--GC-GGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1834 |||| || || ||| |||||||||||||||||||| |||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq3283 Length=49157 Score = 104 bits (114), Expect = 4e-19 Identities = 166/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1671 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1730 || ||||||||||| || | ||| |||| ||||||||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1731 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATAAACTCTTTAAAGTGTT----- 1785 ||||||| |||| ||||| | | || || || | |||| || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1786 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGACC 1844 | | ||| ||| |||||| || |||||||||||||| || || || ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1845 TTGGGACTCAGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAGTGATCTAGCCCA 1903 |||| | | | |||| | ||| | ||||| ||||| || | ||| | |||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq1993 Length=81530 Score = 104 bits (114), Expect = 4e-19 Identities = 126/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1674 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1733 ||||||||||| || | ||| ||| |||||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1734 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATAAACTCTT--TAAAG-TGTTTGAGG 1790 |||| || || ||||| | | ||| || | | |||| || ||| | | ||| | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1791 AAAT--GC-GGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1834 |||| || || |||||||||||||||||||||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq3439 Length=62978 Score = 98.7 bits (108), Expect = 2e-17 Identities = 165/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1671 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1730 || ||| ||||||| || | ||| |||| ||||||||||||||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1731 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATAAACTCTTTAAAGTGTT----- 1785 ||||||| ||||| ||||| | | || || || | |||| || | | || | Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1786 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGACC 1844 | | ||| ||| ||| ||||| |||||||||||||| || || || ||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1845 TTGGGACTCAGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAGTGATCTAGCCCA 1903 |||| | | | |||| | ||| | ||||| ||||| || | ||| | |||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1671 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1730 || ||||||||||| || | ||| || | ||||||| ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1731 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATAAACTCTTTAAAGTGTT----- 1785 ||||||| |||| ||||||| | || || || | |||| || | | || | Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1786 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1834 | | ||| ||| || |||||| |||||||||||||| || || || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq6801 Length=49729 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/165 (73%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 1676 AGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTT 1735 |||| |||| || | ||| ||| ||||||||||||||||||||||| || |||||||| Sbjct 47096 AGGAGTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTT 47155 Query 1736 TGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATAAACTCTT--TAAAG-TGTTTGAGGAA 1792 || || || ||| ||| | || | | ||||| || ||| | | ||| | || Sbjct 47156 TGCATTTGACTGCTAGTTGCGCTGTATGCATACAAACTGTTGATAATGTTTTTTAATTAA 47215 Query 1793 AT--GC-GGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1834 || || || |||||||||||||| |||||||| |||||||| Sbjct 47216 ATAAGCTGGAAGGACGTCATCAATGATATTATACCACGCGTCGTT 47260 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1671 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1730 || ||||||||||| || | ||| |||| || |||||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1731 TACTTTGTGTTGGATTGCCA 1750 ||||||| ||||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq30129 Length=3650 Score = 82.4 bits (90), Expect = 1e-12 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1671 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1730 || ||||||||||| || | ||| |||| ||||||||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1731 TACTTTGTGTTGGATTGCCA 1750 ||||||| |||| ||||| Sbjct 2431 TACTTTGCATTGGCCTGCCA 2450 >seq4104 Length=64936 Score = 82.4 bits (90), Expect = 1e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1670 GGGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCC 1729 ||| ||||||||||| || | ||| |||| ||||||||||||||||||||||| || || Sbjct 20831 GGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCC 20772 Query 1730 GTACTTTG 1737 |||||||| Sbjct 20771 GTACTTTG 20764 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1671 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1730 || ||||||||||| || | ||| |||| ||||||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1731 TACTTTGTGTTGGATTGCCAGT 1752 ||||||| |||| || |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGT 2179 >seq3059 Length=182465 Score = 77.0 bits (84), Expect = 6e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1671 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1730 || ||||||||||| || | ||| |||| ||||||||||||||||||| ||| || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1731 TACTTTGTGTTGGATTGCCAGT 1752 || |||| |||| | ||||| Sbjct 20359 TAATTTGCATTGGCCTACCAGT 20338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8650964261940