Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_011805.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq5745 109 9e-21 seq33 109 9e-21 seq3283 107 3e-20 seq77518 104 4e-19 seq3439 104 4e-19 seq1993 104 4e-19 seq35612 91.5 3e-15 seq22495 91.5 3e-15 seq54129 80.6 5e-12 seq30129 78.8 2e-11 seq4104 78.8 2e-11 >seq5745 Length=45059 Score = 109 bits (120), Expect = 9e-21 Identities = 127/167 (76%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1677 CCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1736 ||||||||||| | | ||| ||| || || ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1737 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1793 |||| || || ||||| | | ||| || || ||||||| || ||| | | ||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1794 AAAT--GC-GGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1837 |||| || || || ||||||||||||||||||||| |||||||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq33 Length=454124 Score = 109 bits (120), Expect = 9e-21 Identities = 127/167 (76%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1677 CCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1736 ||||||||||| || | ||| ||| || |||| ||||||||||||||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1737 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1793 |||| || || ||||||| | || | || | ||||| || ||| | | ||| | Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1794 AAAT--GC-GGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1837 |||| || || |||||||||||||||||||||||| |||||||| Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq3283 Length=49157 Score = 107 bits (118), Expect = 3e-20 Identities = 167/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1674 GGACCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCG 1733 || ||||||||||| || | ||| |||| || |||||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1734 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1788 ||||||| |||| ||||| | | || || || | ||||| || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1789 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGACC 1847 | | ||| ||| |||||| || |||||||||||||| || || || ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1848 TTGGGACTCAGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAATGACCTAGCCCA 1906 |||| | | | |||| | ||| | ||||| ||||| || ||||| | |||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq77518 Length=14724 Score = 104 bits (114), Expect = 4e-19 Identities = 126/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1677 CCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1736 ||||||||||| || | ||| ||| || ||||||||||||||||||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1737 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1793 |||| || || || |||| | ||| || || | ||||| || ||| | | ||| | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1794 AAAT--GC-GGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1837 |||| || || ||| |||||||||||||||||||| |||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq3439 Length=62978 Score = 104 bits (114), Expect = 4e-19 Identities = 166/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1674 GGACCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCG 1733 || ||| ||||||| || | ||| |||| || |||||||||||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1734 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1788 ||||||| ||||| ||||| | | || || || | ||||| || | | || | Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1789 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGACC 1847 | | ||| ||| ||| ||||| |||||||||||||| || || || ||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1848 TTGGGACTCAGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAATGACCTAGCCCA 1906 |||| | | | |||| | ||| | ||||| ||||| || ||||| | |||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq1993 Length=81530 Score = 104 bits (114), Expect = 4e-19 Identities = 126/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1677 CCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1736 ||||||||||| || | ||| ||| || ||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1737 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1793 |||| || || ||||| | | ||| || | | ||||| || ||| | | ||| | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1794 AAAT--GC-GGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1837 |||| || || |||||||||||||||||||||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq35612 Length=1588 Score = 91.5 bits (100), Expect = 3e-15 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1674 GGACCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCG 1733 || ||||||||||| || | ||| |||| ||||||||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1734 TACTTTGTGTTGGATTGCCA 1753 ||||||| ||||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1674 GGACCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCG 1733 || ||||||||||| || | ||| || | || |||| ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1734 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1788 ||||||| |||| ||||||| | || || || | ||||| || | | || | Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1789 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1837 | | ||| ||| || |||||| |||||||||||||| || || || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1674 GGACCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCG 1733 || ||||||||||| || | ||| |||| || |||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1734 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG--TGTT- 1788 ||||||| |||| || |||| || || || | ||||| || ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1789 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTATACCA 1828 | | ||| ||| ||| || || |||||||||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCA 2100 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 1674 GGACCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCG 1733 || ||||||||||| || | ||| |||| || |||||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1734 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT 1779 ||||||| |||| ||||| | | || || || | ||||| || Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTT 2476 >seq4104 Length=64936 Score = 78.8 bits (86), Expect = 2e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1673 GGGACCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCC 1732 ||| ||||||||||| || | ||| |||| || |||||||||||||||||||| || || Sbjct 20831 GGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCC 20772 Query 1733 GTACTTTG 1740 |||||||| Sbjct 20771 GTACTTTG 20764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8641373392470