Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_011919.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq3439 113 8e-22 seq77518 107 3e-20 seq3283 107 3e-20 seq4295 93.3 7e-16 seq33 93.3 7e-16 seq22495 91.5 3e-15 seq5745 91.5 3e-15 seq1993 91.5 3e-15 seq953 82.4 1e-12 seq35612 80.6 5e-12 seq54129 77.0 6e-11 seq20728 77.0 6e-11 seq4104 77.0 6e-11 >seq3439 Length=62978 Score = 113 bits (124), Expect = 8e-22 Identities = 185/267 (69%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 1660 TTTATAACATGAGTTGGGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCGCCTTTAAT 1719 |||||| || | | || ||| ||||||| || | ||| | || || ||||||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1720 TTGAACTGGCTTCCCGTACTTGGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTC 1779 ||||||||| || |||||||| | ||| | ||||| | | || || || | ||||| Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1780 TTTAAAGTGTT------TGAGGAAATGCGGGTCGACATCATCAATGACGTTGTACCACGC 1833 || | | || | | | ||| ||| ||||||||| |||||||| ||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1834 ATCATTGCTGTACACTTTAGGGCTTAGATCTAGATGACCACATAAATAGTTATGTGGGCC 1893 |||||| |||| ||| | | | ||| | | || || ||||| |||||||| Sbjct 799 ATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCC 740 Query 1894 TAATGACCTAGCCCACATTGTTTTGCC 1920 |||||| | |||||| |||||| || Sbjct 739 TAATGAACGAGCCCATGCTGTTTTCCC 713 >seq77518 Length=14724 Score = 107 bits (118), Expect = 3e-20 Identities = 147/200 (74%), Gaps = 9/200 (5%) Strand=Plus/Minus Query 1649 TCCAGGAATTCTTTATAACATGAGTTGGG---CCCAGGATTGCAGAGGAAGATTGTGGGT 1705 |||| |||| |||||||| || | | || |||||||||||| || | ||| || Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1706 ATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTTGATTGCCAGTCCCTTTGG 1765 || ||||||||||||||||||| || ||||||| | ||||| || |||| | ||| Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1766 GCCCCCATGAACTCTT--TAAAG-TGTTTGAGGAAAT--GC-GGGTCGACATCATCAATG 1819 || || | ||||| || ||| | | ||| | |||| || || ||||||||||||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATG 2254 Query 1820 ACGTTGTACCACGCATCATT 1839 ||||| |||||||| || || Sbjct 2253 ACGTTATACCACGCGTCGTT 2234 >seq3283 Length=49157 Score = 107 bits (118), Expect = 3e-20 Identities = 174/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 1676 GGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1735 || ||||||||||| || | ||| | || || |||||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1736 TACTTGGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1790 ||||| | || | ||||| | | || || || | ||||| || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1791 -TGAGGAAATGCGGGTCGACATCATCAATGACGTTGTACCACGCATCATTGCTGTACACT 1849 | | ||| ||| ||| || || |||||||| ||||| |||||||| |||| | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1850 TTAGGGCTTAGATCTAGATGACCACATAAATAGTTATGTGGGCCTAATGACCTAGCCCAC 1909 || | | | ||| | | || || ||||| |||||||||||||| | |||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1910 ATTGTTTTGCC 1920 |||||| || Sbjct 2043 GCTGTTTTCCC 2033 >seq4295 Length=67413 Score = 93.3 bits (102), Expect = 7e-16 Identities = 170/244 (70%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 1682 GGATTGCAGAGGAAGATTGTGGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTG 1741 |||||| |||| | |||| || ||||| |||||||||||| |||| || ||||||||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1742 GTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTT---AAAGTGTTTGAGGAAA 1798 | ||||| | ||| | |||||| | |||| |||||| | | | ||| | ||| Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1799 TGCGGGTCG----ACATCATCAATGACGTTGTACCACGCATCATTGCTGTACACTTTAGG 1854 | || | | || ||||| || ||||||||||| |||| ||| | ||| | Sbjct 46723 T-AGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGA 46665 Query 1855 GCTTAGATCTA-GATGACCACATAAATAGTTATGTGGGCCTAATGACCTAGCCCACATTG 1913 | | ||| | || | ||| || ||||||||||||| ||| |||| ||||| |||| Sbjct 46664 ATTAAAATCCATGAAGCCCA-TTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTG 46606 Query 1914 TTTT 1917 | || Sbjct 46605 TCTT 46602 >seq33 Length=454124 Score = 93.3 bits (102), Expect = 7e-16 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1678 CCCAGGATTGCAGAGGAAGATTGTGGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1737 |||||||||||| || | ||| || || |||| ||||||||||||||| || ||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1738 CTTGGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAG 1794 ||| | ||||| ||||||| | || | || | ||||| || ||| | | ||| | Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1795 GAAAT--GC-GGGTCGACATCATCAATGACGTTGTACCACGCATCATT 1839 |||| || || ||| |||||||||||||| |||||||| || || Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 171/252 (68%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 1654 GAATTCTTTATAACATGAGTTGGGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCGCC 1713 |||| |||||| || | | || ||||||||||| || | ||| | | || |||| Sbjct 392 GAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCA 333 Query 1714 TTTAATTTGAACTGGCTTCCCGTACTTGGTGTTTGATTGCCAGTCCCTTTGGGCCCCCAT 1773 ||||||||||||||| || |||||||| | || | ||||||| | || || || | Sbjct 332 TTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTAC 273 Query 1774 GAACTCTTTAAAGTGTT------TGAGGAAATGCGGGTCGACATCATCAATGACGTTGTA 1827 ||||| || | | || | | | ||| ||| || ||||| |||||||| || Sbjct 272 GAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATA 213 Query 1828 CCACGCATCATTGCTGTACACTTTAGGGCTTAGATCTAGATGACCACATAAATAGTTATG 1887 ||| |||||||| |||| ||| | | | ||| | | || || ||||| || Sbjct 212 CCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTG 153 Query 1888 TGGGCCTAATGA 1899 |||||||||||| Sbjct 152 TGGGCCTAATGA 141 >seq5745 Length=45059 Score = 91.5 bits (100), Expect = 3e-15 Identities = 186/271 (69%), Gaps = 9/271 (3%) Strand=Plus/Plus Query 1659 CTTTATAACATGAGTTGGG---CCCAGGATTGCAGAGGAAGATTGTGGGTATTCCGCCTT 1715 |||||||| || | | || |||||||||||| | | ||| || || || |||| Sbjct 43518 CTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACCTT 43577 Query 1716 TAATTTGAACTGGCTTCCCGTACTTGGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGA 1775 ||||||||||||| || |||||||| | ||||| ||||| | | ||| || || |||| Sbjct 43578 TAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGA 43637 Query 1776 ACTCTT--TAAAG-TGTTTGAGGAAAT--GC-GGGTCGACATCATCAATGACGTTGTACC 1829 ||| || ||| | | ||| | |||| || || || |||||||||||||| |||| Sbjct 43638 ACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTATACC 43697 Query 1830 ACGCATCATTGCTGTACACTTTAGGGCTTAGATCTAGATGACCACATAAATAGTTATGTG 1889 | || || || || ||| | | | ||| | | || || ||| ||||||| Sbjct 43698 ATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTG 43757 Query 1890 GGCCTAATGACCTAGCCCACATTGTTTTGCC 1920 | || || || | ||||| | |||||| || Sbjct 43758 GACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq1993 Length=81530 Score = 91.5 bits (100), Expect = 3e-15 Identities = 120/162 (74%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 1678 CCCAGGATTGCAGAGGAAGATTGTGGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1737 |||||||||||| || | ||| || || ||| |||||||||||||||| || ||||| Sbjct 74404 CCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTA 74345 Query 1738 CTTGGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAG 1794 ||| | ||||| ||||| | | ||| || | | ||||| || ||| | | ||| | Sbjct 74344 CTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAAT 74285 Query 1795 GAAAT--GC-GGGTCGACATCATCAATGACGTTGTACCACGC 1833 |||| || || ||| |||||||||||||| |||||||| Sbjct 74284 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGC 74243 >seq953 Length=224861 Score = 82.4 bits (90), Expect = 1e-12 Identities = 186/274 (68%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 1654 GAATTCTTTATAACATGAGTTGGGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCGCC 1713 |||| |||||| || | | || ||||||||||| | | ||| | || || ||||| Sbjct 1818 GAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCC 1877 Query 1714 TTTAATTTGAACTGGCTTCCCGTACTTGGTGTTTGATTGCCAGTCCCTTTGGGCCCCCAT 1773 ||||||||||| || || |||||||| | || ||||| | | || | || | Sbjct 1878 TTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTAC 1937 Query 1774 GAACTCTT--TAA-AGTGTTTGAGGA---AATGCGGGTCGACATCATCAATGACGTTGTA 1827 ||||| || ||| | | ||| | | ||| ||| ||| || || || ||||| || Sbjct 1938 GAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATA 1997 Query 1828 CCACGCATCATTGCTGTACACTTTAGGGCTTAGATCTAGATGACCACA-TAAATAGTTAT 1886 ||| |||||||| |||| ||| | | | ||| | | | | || || ||||| | Sbjct 1998 CCATGCATCATTTGAGTACGTTTTCGAATTAAAATCCATA-AATCTCATTATGTAGTTGT 2056 Query 1887 GTGGGCCTAATGACCTAGCCCACATTGTTTTGCC 1920 ||||||||||||| | |||||| |||||| || Sbjct 2057 GTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2090 >seq35612 Length=1588 Score = 80.6 bits (88), Expect = 5e-12 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1649 TCCAGGAATTCTTTATAACATGAGTTGGGCCCAGGATTGCAGAGGAAGATTGTGGGTATT 1708 |||| |||| |||||| || | | || ||||||||||| || | ||| | || || Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1709 CCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTTGATTGCCA 1755 |||||||||||||||||||| || |||||||| | ||| | ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq54129 Length=2260 Score = 77.0 bits (84), Expect = 6e-11 Identities = 174/254 (69%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 1676 GGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1735 || ||||||||||| || | ||| | || || |||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1736 TACTTGGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG--TGTT- 1790 ||||| | || | || |||| || || || | ||||| || ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1791 -TGAGGAAATGCGGGTCGACATCATCAATGACGTTGTACCACGCATCATTGCTGTACACT 1849 | | ||| ||| |||||| || |||||||| ||||| ||||||| ||| | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA-TGT 2082 Query 1850 TTAGGGCTTAGA--TC-TAGATGACCACATAAATAGTTATGTGGGCCTAATGACCTAGCC 1906 || || ||| | || || || || || ||||| ||| ||| |||||| | |||| Sbjct 2081 TTTGGAATTAAAATTCATAAAT--CCCATTATGTAGTTGTGTTGGCATAATGAACGAGCC 2024 Query 1907 CACATTGTTTTGCC 1920 || |||||| || Sbjct 2023 CATGCTGTTTTTCC 2010 >seq20728 Length=3653 Score = 77.0 bits (84), Expect = 6e-11 Identities = 156/225 (69%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 1703 GGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTTGATTGCCAGTCCCTT 1762 || || || ||||||||||||| ||| || |||||||| | || | |||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1763 TGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGGA---AATGCGGGTCGACATCATCA 1816 || || || | ||||| || ||| | | ||| | | ||| ||| ||| ||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1817 ATGACGTTGTACCACGCATCATTGCTGTACACTTTAGGGCTTAGATCTAGATGACCACA- 1875 |||||||| || || |||||||| |||| ||| | | | ||||| | | | || Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATA-AATCTCAT 1619 Query 1876 TAAATAGTTATGTGGGCCTAATGACCTAGCCCACATTGTTTTGCC 1920 || ||||| |||||| ||||||| | |||||| |||||| || Sbjct 1620 TATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCC 1664 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1649 TCCAGGAATTCTTTATAACATGAGTTGGGCCCAGGATTGCAGAGGAAGATTGTGGGTATT 1708 |||| ||| |||||| || | | ||| ||||||||||| || | ||| | || || Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1709 CCGCCTTTAATTTGAACTGGCTTCCCGTACTT 1740 |||||||||||||||||||| || |||||||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8686130783330