Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_012041.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq3283 134 2e-28 seq3439 122 2e-24 seq22495 105 1e-19 seq54129 96.9 6e-17 seq4104 96.9 6e-17 seq35612 91.5 3e-15 seq4295 89.7 9e-15 seq442 89.7 9e-15 seq30129 82.4 1e-12 seq6801 80.6 5e-12 seq5745 78.8 2e-11 seq3059 78.8 2e-11 >seq3283 Length=49157 Score = 134 bits (148), Expect = 2e-28 Identities = 197/279 (71%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 1653 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 |||||||||| ||||||| || ||||| |||||||| || | |||| | ||||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1713 TCCGCCTTTAATTTGAACTGGCTTACCGTACTTCGTGTTTGATTGCCAGTCCTTTTGGGA 1772 |||||||||||||||||||| || |||||||| | || | ||||| | || | Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1773 CCCCATGAATTCCTTAAAGTGCT------TTAAGTAGTGGGGATCGACGTCGTCGATGAC 1826 || | ||| | | | | |||| |||| || | ||| ||||||||||||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1827 GTTATACCATGCATCATTGCTGTAAACCCTAGGACTCAAGTCCAGATGCCCGCGTAAATA 1886 |||||||||||||||||| ||| | | | | || |||| | || || || Sbjct 2131 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 2072 Query 1887 GTTGTGTGGGCCTAAAGACCTAGCCCACATTGTCTTCCC 1925 ||||||||||||||| || | |||||| ||| ||||| Sbjct 2071 GTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2033 >seq3439 Length=62978 Score = 122 bits (134), Expect = 2e-24 Identities = 194/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 1653 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 ||| |||||| ||||||| | | ||||| ||||||| || | |||| | ||||| Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1713 TCCGCCTTTAATTTGAACTGGCTTACCGTACTTCGTGTTTGATTGCCAGTCCTTTTGGGA 1772 |||||||||||||||||||| || |||||||| | ||| | ||||| | || | Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1773 CCCCATGAATTCCTTAAAGTGCT------TTAAGTAGTGGGGATCGACGTCGTCGATGAC 1826 || | ||| | | | | |||| |||| || | ||| ||| || |||||||| Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1827 GTTATACCATGCATCATTGCTGTAAACCCTAGGACTCAAGTCCAGATGCCCGCGTAAATA 1886 |||||||||||||||||| ||| | | | | || |||| | || || || Sbjct 811 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 752 Query 1887 GTTGTGTGGGCCTAAAGACCTAGCCCACATTGTCTTCCC 1925 ||||||||||||||| || | |||||| ||| ||||| Sbjct 751 GTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 713 >seq22495 Length=567 Score = 105 bits (116), Expect = 1e-19 Identities = 178/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 1653 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 ||| ||||| ||||||| ||| ||||| |||||||| || | |||| | |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1713 TCCGCCTTTAATTTGAACTGGCTTACCGTACTTCGTGTTTGATTGCCAGTCCTTTTGGGA 1772 |||| ||||||||||||||| || |||||||| | || | ||||||| || | Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1773 CCCCATGAATTCCTTAAAGTGCT------TTAAGTAGTGGGGATCGACGTCGTCGATGAC 1826 || | ||| | | | | |||| |||| || | ||| || ||| |||||||| Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1827 GTTATACCATGCATCATTGCTGTAAACCCTAGGACTCAAGTCCAGATGCCCGCGTAAATA 1886 |||||||||||||||||| ||| | | | | || |||| | || || || Sbjct 218 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTA 159 Query 1887 GTTGTGTGGGCCTAAAGA 1904 ||||||||||||||| || Sbjct 158 GTTGTGTGGGCCTAATGA 141 >seq54129 Length=2260 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1681 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTACCG 1740 ||||| |||||||| || | |||| | ||||| |||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1741 TACTTCGTGTTTGATTGCCAGTCCTTTTGGGACCCCATGAATTCCTTAAAGTGCT----- 1795 ||||| | || | || |||| | || | || | ||| | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1796 -TTAAGTAGTGGGGATCGACGTCGTCGATGACGTTATACCATGCATCATT 1844 |||| || | ||| ||| ||||||||||||||||||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq4104 Length=64936 Score = 96.9 bits (106), Expect = 6e-17 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1653 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 |||||||||| ||||||| ||| |||||| |||||||| || | |||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1713 TCCGCCTTTAATTTGAACTGGCTTACCGTACTT 1745 |||||||||||||||||||| || |||||||| Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq35612 Length=1588 Score = 91.5 bits (100), Expect = 3e-15 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1653 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 ||||||||| ||||||| ||| ||||| |||||||| || | |||| | ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1713 TCCGCCTTTAATTTGAACTGGCTTACCGTACTTCGTGTTTGATTGCCA 1760 |||||||||||||||||||| || |||||||| | ||| | ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4295 Length=67413 Score = 89.7 bits (98), Expect = 9e-15 Identities = 176/253 (70%), Gaps = 17/253 (7%) Strand=Plus/Minus Query 1682 GTCCT-GGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTACCG 1740 ||||| |||||| |||| | ||| || ||||| |||||||||||| |||| |||||| Sbjct 46849 GTCCTTGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCG 46790 Query 1741 TACTTCGTGTTTGATTGCCAGTCCTTTTGGGACCCCATGAATTCCTTAAAGTGCTTT--- 1797 ||||| | ||||| | ||| | | |||| | | |||| || || | | ||| Sbjct 46789 TACTTGGCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTC 46730 Query 1798 ---AAGTAG--TGGGGATCGACGTCGTCGATGACGTTATACCATGCATCATTGCTGTAAA 1852 || ||| | | ||| ||||| || || ||||| |||||||||| ||| | ||| Sbjct 46729 TGCAAATAGGATAGAGAT--ACGTCATCTATAACGTTGTACCATGCATTATT--CGAAAA 46674 Query 1853 --CCCTAGGACTCAAGTCCA-GATGCCCGCGTAAATAGTTGTGTGGGCCTAAAGACCTAG 1909 | | | | || |||| || |||| || ||||| ||||||| |||||||| | Sbjct 46673 TGATTTCGAATTAAAATCCATGAAGCCC-ATTATGTAGTTATGTGGGCATAAAGACCGTG 46615 Query 1910 CCCACATTGTCTT 1922 |||| |||||||| Sbjct 46614 CCCATATTGTCTT 46602 >seq442 Length=237535 Score = 89.7 bits (98), Expect = 9e-15 Identities = 140/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 1653 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 ||||||||| ||||||| |||| ||||| |||||||| || |||| | ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1713 TCCGCCTTTAATTTGAACTGGCTTACCGTACTTCGTGTTTGATTGCCAGTCCTTTTGGGA 1772 |||||||||||||||||| || |||||||| | || | ||| ||| ||| | Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1773 CCCCATGAATTCCTTAAAGTGCT------TTAAGTAGTGGGGATCGACGTCGTCGATGAC 1826 || | ||| | | | | |||| |||| || | | | |||||| ||||| || Sbjct 22870 GCCTACGAACTGTTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAAC 22928 Query 1827 GTTATACCATGCATCATT 1844 |||||||| ||||||||| Sbjct 22929 GTTATACC-TGCATCATT 22945 >seq30129 Length=3650 Score = 82.4 bits (90), Expect = 1e-12 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1653 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 |||||||||| ||| ||| ||| ||||| |||||||| || | |||| | ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1713 TCCGCCTTTAATTTGAACTGGCTTACCGTACTT 1745 |||||||||||||||||| | || |||||||| Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTT 2435 >seq6801 Length=49729 Score = 80.6 bits (88), Expect = 5e-12 Identities = 86/113 (76%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1653 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1709 |||||||||| |||||||| ||| || || ||| |||| || | |||| || Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119 Query 1710 AATTCCGCCTTTAATTTGAACTGGCTTACCGTACTTCGTGTTTGATTGCCAGT 1762 ||| |||||||||||||||||||| || |||||||| | ||||| ||| ||| Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 >seq5745 Length=45059 Score = 78.8 bits (86), Expect = 2e-11 Identities = 138/201 (69%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 1653 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1709 ||| |||||| ||||||| ||| || || |||||||| | | |||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1710 AATTCCGCCTTTAATTTGAACTGGCTTACCGTACTTCGTGTTTGATTGCCAGTCCTTTTG 1769 ||| || ||||||||||||||||| || |||||||| | ||||| ||||| | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1770 GGACCCCATGAATTCCTTAAAGTGCT------TTAAGTAGTGGGGATCGACGTCGTCGAT 1823 | || ||||| | | | | || | |||| || ||| || ||| || || Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAAT 43686 Query 1824 GACGTTATACCATGCATCATT 1844 ||||||||||||||| || || Sbjct 43687 GACGTTATACCATGCGTCGTT 43707 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1653 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 |||||||||| ||||| | ||| ||||| |||||||| || | |||| | ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1713 TCCGCCTTTAATTTGAACTGGCTTACCGTACTT 1745 |||||||||||||||| ||| || ||||| || Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATT 20355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8705312522270