Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_012118.1 Length=2764 Score E Sequences producing significant alignments: (Bits) Value seq3439 118 2e-23 seq3283 118 2e-23 seq22495 113 8e-22 seq4104 102 1e-18 seq3059 100 5e-18 seq35612 98.7 2e-17 seq54129 96.9 6e-17 seq442 96.9 6e-17 seq953 91.5 3e-15 seq30129 89.7 9e-15 seq815 87.8 3e-14 seq80468 86.0 1e-13 seq77518 86.0 1e-13 seq33 82.4 1e-12 seq5745 80.6 5e-12 >seq3439 Length=62978 Score = 118 bits (130), Expect = 2e-23 Identities = 144/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1663 TCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1722 || |||||| ||||||| | | | ||||| ||||||| || | |||| | ||||| Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1723 CCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCC 1782 |||||||||||||||||||| |||||||| |||| |||| ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1783 CCCATGAATTCTTTGAAGTGCT------TTAGATAATGCGGATCGACGTCATCAATGACG 1836 || | ||| | || | |||| ||| ||||| |||| ||| ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1837 TTGTACCAGGCCTCATT 1853 || ||||| || ||||| Sbjct 810 TTATACCATGCATCATT 794 >seq3283 Length=49157 Score = 118 bits (130), Expect = 2e-23 Identities = 144/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1663 TCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1722 ||||||||| ||||||| | || ||||| |||||||| || | |||| | ||||| Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2251 Query 1723 CCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCC 1782 |||||||||||||||||||| || ||||| |||| ||| ||||| | | || || Sbjct 2250 CCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2191 Query 1783 CCCATGAATTCTTTGAAGTGCT------TTAGATAATGCGGATCGACGTCATCAATGACG 1836 || | ||| | || | |||| ||| ||||| |||| |||||| || |||||| Sbjct 2190 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACG 2131 Query 1837 TTGTACCAGGCCTCATT 1853 || ||||| || ||||| Sbjct 2130 TTATACCATGCATCATT 2114 >seq22495 Length=567 Score = 113 bits (124), Expect = 8e-22 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1663 TCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1722 || ||||| ||||||| | ||| ||||| |||||||| || | |||| | |||| Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1723 CCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCC 1782 |||| ||||||||||||||| |||||||| |||| ||| ||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1783 CCCATGAATTCTTTGAAGTGCT------TTAGATAATGCGGATCGACGTCATCAATGACG 1836 || | ||| | || | |||| ||| ||||| |||| || |||||| |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1837 TTGTACCAGGCCTCATT 1853 || ||||| || ||||| Sbjct 217 TTATACCATGCATCATT 201 >seq4104 Length=64936 Score = 102 bits (112), Expect = 1e-18 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 1663 TCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1722 ||||||||| ||||||| | ||| |||||| |||||||| || | |||| | ||||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1723 CCGCCTTTAATTTGAACTGGCTTTCCGTATTTTG 1756 |||||||||||||||||||| |||||||| |||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 20764 >seq3059 Length=182465 Score = 100 bits (110), Expect = 5e-18 Identities = 128/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 1663 TCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1722 ||||||||| ||||| | | ||| ||||| |||||||| || | |||| | ||||| Sbjct 20446 TCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20387 Query 1723 CCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCC 1782 |||||||||||||||| ||| |||||||| |||| ||| | ||||| | || || Sbjct 20386 CCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGCG 20327 Query 1783 CCCATGAATTCTTTGAAGTGCT------TTAGATAATGCGGATCGACGTCATCAATG 1833 || | ||| | || | |||| ||| ||||| |||| |||||| |||||| Sbjct 20326 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq35612 Length=1588 Score = 98.7 bits (108), Expect = 2e-17 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1663 TCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1722 |||||||| ||||||| | ||| ||||| |||||||| || | |||| | ||||| Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1723 CCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCA 1769 |||||||||||||||||||| |||||||| |||| |||| ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq54129 Length=2260 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1690 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCG 1749 ||||| |||||||| || | |||| | ||||| |||||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1750 TATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGCT----- 1804 || |||| ||| || |||| || || || | ||| | || | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1805 -TTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATT 1853 ||| ||||| |||| ||| || || |||||||| ||||| | ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq442 Length=237535 Score = 96.9 bits (106), Expect = 6e-17 Identities = 141/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 1663 TCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1722 |||||||| ||||||| | |||| ||||| |||||||| || |||| | ||||| Sbjct 22751 TCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATC 22810 Query 1723 CCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCC 1782 |||||||||||||||||| |||||||| |||| ||| ||| ||| | ||| || Sbjct 22811 TCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCG 22870 Query 1783 CCCATGAATTCTTTGAAGTGCT------TTAGATAATGCGGATCGACGTCATCAATGACG 1836 || | ||| | || | |||| ||| ||||| || | |||||| || || ||| Sbjct 22871 CCTACGAACTGTTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACG 22929 Query 1837 TTGTACCAGGCCTCATT 1853 || |||| || ||||| Sbjct 22930 TTATACC-TGCATCATT 22945 >seq953 Length=224861 Score = 91.5 bits (100), Expect = 3e-15 Identities = 138/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 1663 TCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1722 || ||||| ||||||| | ||| ||||| |||||||| | | |||| | ||||| Sbjct 1813 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATC 1872 Query 1723 CCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCC 1782 |||||||||||||||| || |||||||| |||| ||| ||||| | | || | Sbjct 1873 CCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACG 1932 Query 1783 CCCATGAATTCTTTGAAGTGCT------TTAGATAATGCGGATCGACGTCATCAATGACG 1836 || | ||| | || | | || ||| ||||| |||| |||||| || || ||| Sbjct 1933 CCTACGAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACG 1992 Query 1837 TTGTACCAGGCCTCATT 1853 || ||||| || ||||| Sbjct 1993 TTATACCATGCATCATT 2009 >seq30129 Length=3650 Score = 89.7 bits (98), Expect = 9e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1663 TCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1722 ||||||||| ||| ||| | ||| ||||| |||||||| || | |||| | ||||| Sbjct 2344 TCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2403 Query 1723 CCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCA 1769 |||||||||||||||||| | |||||||| |||| ||| ||||| Sbjct 2404 CCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450 >seq815 Length=151552 Score = 87.8 bits (96), Expect = 3e-14 Identities = 137/195 (70%), Gaps = 7/195 (4%) Strand=Plus/Minus Query 1665 CAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCC 1724 ||| ||| ||||||| | ||| ||||| |||||||| || | ||| | ||||| || Sbjct 85448 CAATAACGTTTTATAGGAT-AATCAGGTCCAGGATTGCAAAGTACAATACTTGGAATCCC 85390 Query 1725 GCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCC 1784 ||||||||||||| | || ||| |||| |||| ||| | ||||| | || || || Sbjct 85389 GCCTTTAATTTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCC 85330 Query 1785 CATGAATTCTTTGAAGTGCT------TTAGATAATGCGGATCGACGTCATCAATGACGTT 1838 | ||| | || | | || ||| ||||| | || |||||| || |||||||| Sbjct 85329 TACGAACTATTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTT 85270 Query 1839 GTACCAGGCCTCATT 1853 ||||| || ||||| Sbjct 85269 ATACCATGCATCATT 85255 >seq80468 Length=4946 Score = 86.0 bits (94), Expect = 1e-13 Identities = 138/197 (70%), Gaps = 11/197 (6%) Strand=Plus/Plus Query 1665 CAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCC 1724 |||||| ||||||| | ||| ||||| ||||||| || | |||| | |||||||| Sbjct 4241 CAAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCC 4300 Query 1725 GCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCA--GTCCCTTTGGGCC 1782 ||||||||| ||||| || |||||||| ||||| ||| | ||| || | || || Sbjct 4301 GCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATTGGCCTACCATTGTGC---TGTGCG 4357 Query 1783 CCCATGAATTCTTTGAAGTGCT------TTAGATAATGCGGATCGACGTCATCAATGACG 1836 || | ||| | || | |||| ||| ||||| | | |||||| | |||||| Sbjct 4358 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTTGAAGGGACGTCGTTGATGACG 4417 Query 1837 TTGTACCAGGCCTCATT 1853 || ||||| || | ||| Sbjct 4418 TTATACCATGCATAATT 4434 >seq77518 Length=14724 Score = 86.0 bits (94), Expect = 1e-13 Identities = 139/200 (70%), Gaps = 9/200 (5%) Strand=Plus/Minus Query 1663 TCCAAGAACTCTTTATAGCTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGGA 1719 |||||||| ||||||| | ||| || || |||||||| || | |||| ||| Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1720 ATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGG 1779 || ||||||||||||||||||| ||| |||| |||| || || |||| | ||| Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1780 GCCCCCATGAATTCTTTGAAGTGCT------TTAGATAATGCGGATCGACGTCATCAATG 1833 || || | ||| | || | |||| ||| |||| ||| ||| ||||||||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATG 2254 Query 1834 ACGTTGTACCAGGCCTCATT 1853 ||||| ||||| || || || Sbjct 2253 ACGTTATACCACGCGTCGTT 2234 >seq33 Length=454124 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1693 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1752 || |||||||| || | |||| ||||| |||| ||||||||||||||| |||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1753 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGCT------TT 1806 |||| || ||||||| | || | || | ||| | || | || | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1807 AGATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATT 1853 | |||| ||| |||||||||||||||||| ||||| || || || Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq5745 Length=45059 Score = 80.6 bits (88), Expect = 5e-12 Identities = 138/200 (69%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 1663 TCCAAGAACTCTTTATAGCTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGGA 1719 || |||||| ||||||| | ||| || || |||||||| | | |||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1720 ATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGG 1779 || || ||||||||||||||||| || ||||| |||| || ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1780 GCCCCCATGAATTCTTTGAAGTGCT------TTAGATAATGCGGATCGACGTCATCAATG 1833 || || ||||| | || | || | ||| |||| ||| || |||||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1834 ACGTTGTACCAGGCCTCATT 1853 ||||| ||||| || || || Sbjct 43688 ACGTTATACCATGCGTCGTT 43707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8727691217700