Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_012137.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq5745 111 3e-21 seq33 111 3e-21 seq77518 107 3e-20 seq3439 107 3e-20 seq3283 107 3e-20 seq1993 104 4e-19 seq22495 96.9 6e-17 seq30129 87.8 3e-14 seq35612 86.0 1e-13 seq3059 84.2 4e-13 seq442 84.2 4e-13 seq54129 80.6 5e-12 seq953 80.6 5e-12 seq4104 77.0 6e-11 >seq5745 Length=45059 Score = 111 bits (122), Expect = 3e-21 Identities = 169/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 1680 CCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1739 ||||||||||| | | ||| || ||||| ||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1740 TTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1796 |||| || |||||||| | | ||| || || ||||||| || ||| | | ||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1797 AAAT--GC-GGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTATACTTTG 1853 |||| || || || ||||||||||||||| ||||| |||||||| ||| ||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1854 GGACTCAGGTCCAGATGTCCGCACAAATAGTTATGTGGTCCCAATGATCTAGCCCA 1909 | | ||| |||| | || | ||| |||||||| ||||| || | ||||| Sbjct 43721 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq33 Length=454124 Score = 111 bits (122), Expect = 3e-21 Identities = 169/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 1680 CCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1739 ||||||||||| || | ||| || ||||||| ||||||||||||||| |||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1740 TTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1796 |||| || |||||||||| | || | || | ||||| || ||| | | ||| | Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1797 AAAT--GC-GGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTATACTTTG 1853 |||| || || |||||||||||||||||| ||||| |||||||| |||| | | Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1854 GGACTCAGGTCCAGATGTCCGCACAAATAGTTATGTGGTCCCAATGATCTAGCCCA 1909 | | ||| |||| | || | || |||||||| ||||| || | ||||| Sbjct 403122 GAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq77518 Length=14724 Score = 107 bits (118), Expect = 3e-20 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 1680 CCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1739 ||||||||||| || | ||| || |||||||||||||||||||||| ||| |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1740 TTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1796 |||| || ||||| |||| | ||| || || | ||||| || ||| | | ||| | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1797 AAAT--GC-GGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTATACTTTG 1853 |||| || || ||| |||||||||||||| ||||| |||||||| |||| ||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTC 2221 Query 1854 GGACTCAGGTCCAGATGTCCGCACAAATAGTTATGTGGTCCCAA 1897 | ||| |||| | || | ||| |||||||| ||||| Sbjct 2220 AAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAA 2177 >seq3439 Length=62978 Score = 107 bits (118), Expect = 3e-20 Identities = 167/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1677 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1736 || ||| ||||||| || | ||| | || ||||||||||||||||||||||| |||||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1737 TATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1791 || |||| ||||| ||||| | || || || || | ||||| || | | || | Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1792 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTATACT 1850 | | ||| ||| ||| ||||| |||||||| ||||| || || || ||| | Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1851 TTGGGACTCAGGTCCAGATGTCCGCACAAATAGTTATGTGGTCCCAATGATCTAGCCCA 1909 |||| | | | |||| | ||| | ||||| ||||| || ||||| | |||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq3283 Length=49157 Score = 107 bits (118), Expect = 3e-20 Identities = 167/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1677 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1736 || ||||||||||| || | ||| | || ||||||||||||||||||||||| || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1737 TATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1791 || |||| |||| |||||| | || || || || | ||||| || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1792 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTATACT 1850 | | ||| ||| |||||| || |||||||| ||||| || || || ||| | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1851 TTGGGACTCAGGTCCAGATGTCCGCACAAATAGTTATGTGGTCCCAATGATCTAGCCCA 1909 |||| | | | |||| | ||| | ||||| ||||| || ||||| | |||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq1993 Length=81530 Score = 104 bits (114), Expect = 4e-19 Identities = 162/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1680 CCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1739 ||||||||||| || | ||| || |||||| |||||||||||||||| || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1740 TTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1796 |||| || |||||||| | | ||| || | | ||||| || ||| | | ||| | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1797 AAAT--GC-GGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTATACTTTG 1853 |||| || || |||||||||||||||||| ||||| |||| ||| ||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTTTTC 74224 Query 1854 GGACTCAGGTCCAGATGTCCGCACAAATAGTTATGTGGTCCCAATGA 1900 | | ||| |||| | || | ||| |||||||| ||||| || Sbjct 74223 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGA 74177 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 1677 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1736 || ||||||||||| || | ||| | | ||||||| ||||||||||||||| |||||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1737 TATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1791 || |||| |||| |||||||| | || || || | ||||| || | | || | Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1792 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTATACT 1850 | | ||| ||| || |||||| |||||||| ||||| || || || ||| | Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 191 Query 1851 TTGGGACTCAGGTCCAGATGTCCGCACAAATAGTTATGTGGTCCCAATGA 1900 |||| | | | |||| | ||| | ||||| ||||| || ||||| Sbjct 190 TTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq30129 Length=3650 Score = 87.8 bits (96), Expect = 3e-14 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 1677 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1736 || ||||||||||| || | ||| | || ||||||||||||||||||||| | |||||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1737 TATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTT 1782 || |||| |||| |||||| | || || || || | ||||| || Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTT 2476 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1677 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1736 || ||||||||||| || | ||| | || || |||||||||||||||||||| |||||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1737 TATTTTGTGTTGGACTGCCA 1756 || |||| ||||| |||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq3059 Length=182465 Score = 84.2 bits (92), Expect = 4e-13 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 1677 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1736 || ||||||||||| || | ||| | || ||||||||||||||||||| ||| |||||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1737 TATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTT 1782 || |||| |||| || ||||| | || || || | ||||| || Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTT 20314 >seq442 Length=237535 Score = 84.2 bits (92), Expect = 4e-13 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1674 TTCGGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTT 1733 || || ||||||||||| || ||| | || ||| |||||||||||||||||| ||| Sbjct 22775 TTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAACTGATTTT 22834 Query 1734 CCGTATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTT 1782 ||||| |||| |||| |||| ||| || ||| || || | ||||| || Sbjct 22835 CCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTT 22883 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1677 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1736 || ||||||||||| || | ||| | || ||||||||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1737 TATTTTGTGTTGGACTGCCAGT 1758 || |||| |||| ||| |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGT 2179 >seq953 Length=224861 Score = 80.6 bits (88), Expect = 5e-12 Identities = 163/239 (68%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 1677 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1736 || ||||||||||| | | ||| | || ||||||||||||||||||| || |||||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1737 TATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTT--TAA-AGTGTTTG 1793 || |||| ||| |||||| | || || | || | ||||| || ||| | | ||| Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1794 AGGA---AATGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTATACT 1850 | | ||| ||| |||||| || || ||||| ||||| || || || ||| | Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTT 2019 Query 1851 TTGGGACTCAGGTCCAGATGTCCGCACAAATAGTTATGTGGTCCCAATGATCTAGCCCA 1909 || | | | | |||| | || | ||||| ||||| || ||||| | |||||| Sbjct 2020 TTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2078 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1677 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1736 || ||||||||||| || | ||| | || ||||||||||||||||||||||| |||||| Sbjct 20830 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 20771 Query 1737 TATTTTG 1743 || |||| Sbjct 20770 TACTTTG 20764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8711706435250