Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_012206.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq3439 105 1e-19 seq3283 104 4e-19 >seq3439 Length=62978 Score = 105 bits (116), Expect = 1e-19 Identities = 176/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 1711 TTTATATGATGATGTTGGACCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAAT 1770 |||||| ||| || || || ||||||| || | |||| | ||||| || |||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1771 TTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATAAATTC 1830 ||||| || || |||||||| | |||| ||||| | || || || || | || | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1831 TTTGAAGTGTT------TGAGGTAATGGGGATCGACGTCATCAATGACGTTATACCAAGC 1884 || | || | | | |||| ||| ||| ||||| |||||||||||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1885 ATCATTTGAATACACCTTTGGGCTAAGATCAAGATGCCCACACAAGTAATTGTGTGGACC 1944 ||||||||| ||| || | ||| ||| | | || | ||| |||||||| || Sbjct 799 ATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCC 740 Query 1945 TAATGACCTAGCCCA 1959 |||||| | |||||| Sbjct 739 TAATGAACGAGCCCA 725 >seq3283 Length=49157 Score = 104 bits (114), Expect = 4e-19 Identities = 178/256 (70%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 1711 TTTATATGAT-GATGTTGGACCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAA 1769 |||||| ||| ||| || || |||||||| || | |||| | ||||| || ||||||| Sbjct 2299 TTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAA 2241 Query 1770 TTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATAAATT 1829 |||||| || ||||||||||| | ||| ||||| | || || || || | || | Sbjct 2240 TTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT 2181 Query 1830 CTTTGAAGTGTT------TGAGGTAATGGGGATCGACGTCATCAATGACGTTATACCAAG 1883 || | || | | | |||| ||| |||||| || |||||||||||||| | Sbjct 2180 GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATG 2121 Query 1884 CATCATTTGAATACACCTTTGGGCTAAGATCAAGATGCCCACACAAGTAATTGTGTGGAC 1943 |||||||||| ||| || | ||| ||| | | || | ||| |||||||| | Sbjct 2120 CATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGC 2061 Query 1944 CTAATGACCTAGCCCA 1959 ||||||| | |||||| Sbjct 2060 CTAATGAACGAGCCCA 2045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8788187314275