Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_012492.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq3283 102 1e-18 seq3439 96.9 6e-17 seq5745 77.0 6e-11 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 176/251 (70%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 1605 GAATTCTGCATTCTTTAT-GCCCAGATCTTTTAGTGCTGAATTCTTTTCCTCATCCAAGT 1663 |||||||||||| | || | ||| | || | | |||||| ||| ||||||| Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA-TGAATTGGACTCCAAATCCAAGA 2304 Query 1664 ACTCTTTATATGAT-GATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCT 1722 || |||||| ||| ||| || || |||||||| || | |||| | ||||| || ||| Sbjct 2303 ACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCT 2245 Query 1723 TTAATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATG 1782 |||||||| | || ||||||||||||| ||| ||||| | | || || || | | Sbjct 2244 TTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACG 2185 Query 1783 AACTCCTTAAAGTGCT------TTAGATAGTGGGGATCGACGTCATCAATGACGTTGTAC 1836 |||| | | | |||| ||| ||| | ||| |||||| || |||||||| ||| Sbjct 2184 AACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATAC 2125 Query 1837 CAGGCATCATT 1847 || |||||||| Sbjct 2124 CATGCATCATT 2114 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1656 ATCCAAGTACTCTTTATATGATGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAAT 1715 ||| ||| || |||||| ||| || || || ||||||| || | |||| | ||||| Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1716 TCCACCTTTAATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGC 1775 || ||||||||||| | || || |||||||||| |||| ||||| | | || || Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1776 CCCCATGAACTCCTTAAAGTGCT------TTAGATAGTGGGGATCGACGTCATCAATGAC 1829 || | ||||| | | | |||| ||| ||| | ||| ||| ||||| ||||| Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1830 GTTGTACCAGGCATCATT 1847 ||| ||||| |||||||| Sbjct 811 GTTATACCATGCATCATT 794 >seq5745 Length=45059 Score = 77.0 bits (84), Expect = 6e-11 Identities = 139/202 (69%), Gaps = 11/202 (5%) Strand=Plus/Plus Query 1656 ATCCAAGTACTCTTTATATGATGATGTCGGG----CCTGGATTGCAGAGGAAGATAGTGG 1711 ||| ||| || ||||||| ||| | || || || |||||||| | | |||| | Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAA-TCTGGACCCCCAGGATTGCAAATCACGATACATG 43565 Query 1712 GAATTCCACCTTTAATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTT 1771 |||| |||||||||||||| | || || |||||||||| || ||||| | | || Sbjct 43566 GAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATT 43625 Query 1772 GGGCCCCCATGAACTCCTTAAAGTGCT------TTAGATAGTGGGGATCGACGTCATCAA 1825 | || || ||||||| | | | || | ||| ||| ||| || |||||||| Sbjct 43626 GTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAA 43685 Query 1826 TGACGTTGTACCAGGCATCATT 1847 ||||||| ||||| || || || Sbjct 43686 TGACGTTATACCATGCGTCGTT 43707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8689327739820