Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_012665.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq3283 105 1e-19 seq77518 104 4e-19 seq5745 104 4e-19 seq33 104 4e-19 seq1993 100 5e-18 seq22495 96.9 6e-17 seq3439 96.9 6e-17 seq54129 84.2 4e-13 seq35612 82.4 1e-12 seq490 80.6 5e-12 seq30129 78.8 2e-11 seq3059 78.8 2e-11 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 125/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1670 GGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1729 || ||||||||||| || | ||| | || || |||||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1730 TATTTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1784 || |||| |||| |||||| | | || || || | ||||| || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1785 -TGAGGAAATGCGGATCGACGTCATCAATGACGTTATACCAAGCGTCGTT 1833 | | ||| |||| |||||| || |||||||||||||| || || || Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq77518 Length=14724 Score = 104 bits (114), Expect = 4e-19 Identities = 125/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1673 CCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1732 ||||||||||| || | ||| || || ||||||||||||||||||| || |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1733 TTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGC---TTGAGG 1789 |||| || ||||| |||| | ||| || || | ||||| || | | ||| || | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1790 AAAT--GC-GGATCGACGTCATCAATGACGTTATACCAAGCGTCGTT 1833 |||| || ||| ||| |||||||||||||||||||| |||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq5745 Length=45059 Score = 104 bits (114), Expect = 4e-19 Identities = 126/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1673 CCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1732 ||||||||||| | | ||| || || || ||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1733 TTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTGAGG 1789 |||| || |||||||| | | ||| || || ||||||| || ||| | | || | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1790 AAAT--GC-GGATCGACGTCATCAATGACGTTATACCAAGCGTCGTT 1833 |||| || ||| || ||||||||||||||||||||| |||||||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq33 Length=454124 Score = 104 bits (114), Expect = 4e-19 Identities = 126/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1673 CCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1732 ||||||||||| || | ||| || || |||| ||||||||||||||| || ||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1733 TTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTGAGG 1789 |||| || |||||||||| | || | || | ||||| || ||| | | || | Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1790 AAAT--GC-GGATCGACGTCATCAATGACGTTATACCAAGCGTCGTT 1833 |||| || ||| |||||||||||||||||||||||| |||||||| Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq1993 Length=81530 Score = 100 bits (110), Expect = 5e-18 Identities = 125/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1673 CCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1732 ||||||||||| || | ||| || || ||| |||||||||||||||| || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1733 TTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTGAGG 1789 |||| || |||||||| | | ||| || | | ||||| || ||| | | || | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1790 AAAT--GC-GGATCGACGTCATCAATGACGTTATACCAAGCGTCGTT 1833 |||| || ||| |||||||||||||||||||||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1670 GGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1729 || ||||||||||| || | ||| | | || |||| ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1730 TATTTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1784 || |||| |||| |||||||| | || || || | ||||| || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1785 -TGAGGAAATGCGGATCGACGTCATCAATGACGTTATACCAAGCGTCGTT 1833 | | ||| |||| || |||||| |||||||||||||| || || || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1670 GGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1729 || ||| ||||||| || | ||| | || || |||||||||||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1730 TATTTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1784 || |||| ||||| ||||| | | || || || | ||||| || | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1785 -TGAGGAAATGCGGATCGACGTCATCAATGACGTTATACCAAGCGTCGTT 1833 | | ||| |||| ||| ||||| |||||||||||||| || || || Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq54129 Length=2260 Score = 84.2 bits (92), Expect = 4e-13 Identities = 117/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1670 GGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1729 || ||||||||||| || | ||| | || || |||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1730 TATTTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTG 1786 || |||| |||| ||| |||| || || || | ||||| || ||| | | ||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1787 AGGA---AATGCGGATCGACGTCATCAATGACGTTATACCA 1824 | | ||| |||| ||| || || |||||||||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCA 2100 >seq35612 Length=1588 Score = 82.4 bits (90), Expect = 1e-12 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1670 GGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1729 || ||||||||||| || | ||| | || || |||||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1730 TATTTTGTGTTGGACTGCCA 1749 || |||| ||||| |||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq490 Length=137872 Score = 80.6 bits (88), Expect = 5e-12 Identities = 114/156 (73%), Gaps = 12/156 (8%) Strand=Plus/Minus Query 1678 ATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGT 1737 ||||||||||| |||| |||||||| ||||||||||| | |||||| | ||||||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1738 GTTGGACTGCCAGTCCCTTTG---GGCCCCCATGAACTCTTTAAAGTGCTT----GAG-G 1789 | | |||||| || || |||||| || | ||| | | ||||| || | Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1790 AAATGC-GGATCGACGTCATCAATGACGTTATACCA 1824 | |||| ||| ||||||||| |||||||||||||| Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCA 70466 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1670 GGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1729 || ||||||||||| || | ||| | || || |||||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1730 TATTTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTT 1785 || |||| |||| |||||| | | || || || | ||||| || | | ||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1670 GGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1729 || ||||||||||| || | ||| | || || |||||||||||||||| ||| || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1730 TATTTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTT 1785 || |||| |||| || ||||| | || || || | ||||| || | | ||||| Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTT 20304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8660555131410