Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_012786.1 Length=2672 Score E Sequences producing significant alignments: (Bits) Value seq5745 111 3e-21 seq33 102 1e-18 seq22495 89.7 9e-15 seq3439 87.8 3e-14 seq3283 87.8 3e-14 seq490 84.2 4e-13 seq77518 77.0 5e-11 seq4295 77.0 5e-11 >seq5745 Length=45059 Score = 111 bits (122), Expect = 3e-21 Identities = 250/367 (68%), Gaps = 23/367 (6%) Strand=Plus/Plus Query 1496 ATAGAGGGGGGAGTTGAGGAAGACGAATTGCGCATTTCGAAGGGTCCA--ATTTCTAAGT 1553 |||||| |||| || || |||| |||| |||||| | | ||| | |||||||| | Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1554 GATGCGTTTTCCTCTTTGTCGAGGAAGTCTTTATAG-------CTGGACCCTTCCCCTGG 1606 || ||| ||| | || | ||| ||||||| |||||||| || || Sbjct 43492 --TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCC----CCAGG 43545 Query 1607 ATTACAGAGCACGATTGAAGGAACTCCACCTTTAATTTGAACTGGCTTTCCGTA-TTTAC 1665 ||| || | |||||| | |||| |||||||||||||||||||| || ||||| ||| | Sbjct 43546 ATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGC 43605 Query 1666 AGTTGGACTGCCAGTCCCTTTGGGCCCCAATGAGTTCCTTCCAGTGCTTCATTTTCAGAT 1725 | || |||||||| | | ||| || || |||| | | | || || | | | || Sbjct 43606 A-TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAAT 43664 Query 1726 AATGTGGGCTAATGTCATCAATGACGTTATATTCCA--CGTCATTTGAATAAACCCTGGA 1783 || ||| |||||||||||||||||||| ||| |||| || || || | || Sbjct 43665 AAGCTGGAGGGATGTCATCAATGACGTTATA--CCATGCGTCGTTCGATTATGTTTTCGA 43722 Query 1784 ATTGAAATCCA-AGTGTCCACTAAGATAATTATGGACTCCTAATGAACGAGCCCACATTG 1842 ||| ||||||| | | ||| | | ||||||||| || || ||||| ||||| | || Sbjct 43723 ATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCAAACTG 43781 Query 1843 TCTTCCC 1849 | || || Sbjct 43782 TTTTACC 43788 >seq33 Length=454124 Score = 102 bits (112), Expect = 1e-18 Identities = 241/356 (68%), Gaps = 10/356 (3%) Strand=Plus/Minus Query 1497 TAGAGGGGGGAGTTGAGGAAGACGAATTGCGCATTTCGAAGGGTCCA--ATTTCTAAGTG 1554 || || |||| || || |||| ||||| ||||| | | ||||| ||||| || | Sbjct 403409 TATAGAGGGGTGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATT- 403351 Query 1555 ATGCGTTTTCCTCTTTGTCGAGGAAGTCTTTATAGCTGGACCCTT--CCCCTGGATTACA 1612 || ||| ||| | |||| ||| ||||||| || || |||| ||||| || Sbjct 403350 -TGAATTTGAATCTATATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCA 403292 Query 1613 GAGCACGATTGAAGGAACTCCACCTTTAATTTGAACTGGCTTTCCGTA-TTTACAGTTGG 1671 |||||||| | |||| || | ||||||||||||||| |||||||| ||| || || | Sbjct 403291 AAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCA-TTTG 403233 Query 1672 ACTGCCAGTCCCTTTGGGCCCCAATGAGTTCCTTCCAGTGCTTCATTTTCAGATAATGTG 1731 ||||||||| | || | || | || | | | || || | | | |||| || Sbjct 403232 ACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTG 403173 Query 1732 GGCTAATGTCATCAATGACGTTATATTCCACGTCATTTGAATAAACCCTGGAATTGAAAT 1791 | | |||||||||||||||||| | |||| || || || || ||||| |||| Sbjct 403172 GAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAAT 403113 Query 1792 CCA-AGTGTCCACTAAGATAATTATGGACTCCTAATGAACGAGCCCACATTGTCTT 1846 ||| | | ||| || | |||||||| || || ||||| ||||| | ||| || Sbjct 403112 CCATAAAGCCCATTATG-TAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTT 403058 >seq22495 Length=567 Score = 89.7 bits (98), Expect = 9e-15 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 1602 CCTGGATTACAGAGCACGATTGAAGGAACTCCACCTTTAATTTGAACTGGCTTTCCGTA- 1660 || ||||| || || ||||| ||| || | ||||||||||||||| |||||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1661 TTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATGAGTTCCTTCCAGTGCTTCATTTT 1720 ||| || |||| |||||||| | || || || | || | | || |||||| | | Sbjct 307 TTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1721 CAGATAATGTGGGCTAATGTCATCAATGACGTTATATTCCACG--TCATTTGAATAAACC 1778 | ||||| || |||||||| ||||||||||| ||| | |||||||| || Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATA--CCATGCATCATTTGAGTACGTT 191 Query 1779 CTGGAATTGAAATCCAAGTGTCCACTAAGATAATTATGGACTCCTAATGAACGA 1832 ||||||| |||||||| ||| | | || || || |||||||||||| Sbjct 190 TTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 >seq3439 Length=62978 Score = 87.8 bits (96), Expect = 3e-14 Identities = 239/361 (66%), Gaps = 14/361 (4%) Strand=Plus/Minus Query 1496 ATAGAGGGGGGAGTTGAGGAAGACGAATTGCGCATTTCGAAGGGTCCAA--TTTCTAAGT 1553 ||||||||||| || || |||| |||| |||||| | || |||||| |||| || Sbjct 1066 ATAGAGGGGGGTGTCGACGAAGTGAAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAAT- 1008 Query 1554 GATGCGTTTTCCTCTTTGTCGAGGAAGTCTTTATAGCTGGACCCTTCC---CCTGGATTA 1610 ||| || ||| || | ||| ||||||| || ||| || |||| Sbjct 1007 -ATGAATTGGACTCCAAATCTAAGAACGTTTTATAG---GATAATTCAGGTCCAAGATTG 952 Query 1611 CAGAGCACGATTGAAGGAACTCCACCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTG 1670 || || ||||| |||| || ||||||||||||||||| |||||||| || |||| Sbjct 951 CAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTG 892 Query 1671 GACTGCCAGTCCCTTTGGGCCCCAATGAGTTCCTTCCAGTGCTTCATTTTCAGATAATGT 1730 | ||||| | | || || || | || | | | |||||| | | | ||||| Sbjct 891 GCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTC 832 Query 1731 GGGCTAATGTCATCAATGACGTTATATTCCA--CGTCATTTGAATAAACCCTGGAATTGA 1788 || | ||||| ||||||||||| ||| | |||||||| || ||||||| | Sbjct 831 GGAGGGACATCATCGATGACGTTATA--CCATGCATCATTTGAGTACGTTTTGGAATTAA 774 Query 1789 AATCCAAGTGTCCACTAAGATAATTATGGACTCCTAATGAACGAGCCCACATTGTCTTCC 1848 |||||| ||| | | || || || ||||||||||||||||| ||| |||| Sbjct 773 AATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCC 714 Query 1849 C 1849 | Sbjct 713 C 713 >seq3283 Length=49157 Score = 87.8 bits (96), Expect = 3e-14 Identities = 241/360 (67%), Gaps = 12/360 (3%) Strand=Plus/Minus Query 1496 ATAGAGGGGGGAGTTGAGGAAGACGAATTGCGCATTTCGAAGGGTCCAA--TTTCTAAGT 1553 |||| |||||| || || |||| ||||| |||||| | || |||||| |||| || Sbjct 2386 ATAGTGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAAT- 2328 Query 1554 GATGCGTTTTCCTCTTTGTCGAGGAAGTCTTTATAGC-TGGACCCTTCCCCTGGATTACA 1612 ||| || ||| || | ||| ||||||| | || | || ||||| || Sbjct 2327 -ATGAATTGGACTCCAAATCCAAGAACGTTTTATAGGATTGATCAGGTCCA-GGATTGCA 2270 Query 1613 GAGCACGATTGAAGGAACTCCACCTTTAATTTGAACTGGCTTTCCGTA-TTTACAGTTGG 1671 || ||||| |||| || ||||||||||||||||| || ||||| ||| || |||| Sbjct 2269 AAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCA-TTGG 2211 Query 1672 ACTGCCAGTCCCTTTGGGCCCCAATGAGTTCCTTCCAGTGCTTCATTTTCAGATAATGTG 1731 |||||| | | || || || | || | | | |||||| | | | ||||| | Sbjct 2210 CCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCG 2151 Query 1732 GGCTAATGTCATCAATGACGTTATATTCCA--CGTCATTTGAATAAACCCTGGAATTGAA 1789 | | ||| || ||||||||||| ||| | |||||||| || ||||||| || Sbjct 2150 GAGGGACGTCGTCGATGACGTTATA--CCATGCATCATTTGAGTACGTTTTGGAATTAAA 2093 Query 1790 ATCCAAGTGTCCACTAAGATAATTATGGACTCCTAATGAACGAGCCCACATTGTCTTCCC 1849 ||||| ||| | | || || || ||||||||||||||||| ||| ||||| Sbjct 2092 ATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2033 >seq490 Length=137872 Score = 84.2 bits (92), Expect = 4e-13 Identities = 225/332 (68%), Gaps = 19/332 (6%) Strand=Plus/Minus Query 1496 ATAGAGGGGGGAGTTGAGGAAGACGAATTGCGCATTTCGAAGGGTCCAATTTCTAAGTGA 1555 ||||| ||||| |||| ||| ||||| |||||| || ||||| | ||| | | Sbjct 70732 ATAGAAGGGGGTGTTGGCGAAATAGAATTCTGCATTTGCAATCGTCCACTCTCTTATATA 70673 Query 1556 TGCGTTTTCCTCTTTGTCGAGGAAGTCTTTATAGCTGGACCCT-TCCCCTGG--ATTACA 1612 || || | | || || | ||| |||||| | | ||| | | || ||| || Sbjct 70672 CGCATTAACATTCTTATCCAAGAATGATTTATAAGAGTAGCCTGTACTCTCATTATTGCA 70613 Query 1613 GAGCACGATTGAAGGAACTCCACCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGGA 1672 || || ||||| || | ||||||||||||||| | |||||| | ||||| | | | Sbjct 70612 TAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGAATCAGC 70553 Query 1673 CTGCCAGTCCCTTTG---GGCCCCAATGAGTTCCTTCCAGTGCTTCATTTTCAGATA-AT 1728 |||||| || || ||||||||| || ||| |||| |||||| || |||| | || Sbjct 70552 TTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTC--TTCCAGAGAGAT 70498 Query 1729 G-TGGGCTAATGTCATCAATGACGTTATATTCCACG--TCATTTGAATAAACCCTGGAAT 1785 | ||| | |||||| ||||||||||| ||| | ||||| ||| | | | || Sbjct 70497 GCTGGAGGGACGTCATCTATGACGTTATA--CCATGACTCATTGGAAAATGTCTTTCTAT 70440 Query 1786 TGAAATCCA-AGTGTCCACTAAGATAATTATG 1816 ||||||||| | | ||| ||| |||||||| Sbjct 70439 TGAAATCCATAACGCCCA-TAAAGTAATTATG 70409 >seq77518 Length=14724 Score = 77.0 bits (84), Expect = 5e-11 Identities = 240/365 (66%), Gaps = 19/365 (5%) Strand=Plus/Minus Query 1496 ATAGAGGGGGGAGTTGAGGAAGACGAATTGCGCATTTCGAAGGGTCCA--ATTTCTAAGT 1553 |||||| ||| || || |||| ||||| |||||| | | ||||| |||| || | Sbjct 2509 ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATT 2450 Query 1554 GATGCGTTTTCCTCTTTGTCGAGGAAGTCTTTATAG-------CTGGACCCTTCCCCTGG 1606 || ||| ||| || | ||| ||||||| |||||||| || || Sbjct 2449 --TGAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCC----CCAGG 2396 Query 1607 ATTACAGAGCACGATTGAAGGAACTCCACCTTTAATTTGAACTGGCTTTCCGTA-TTTAC 1665 ||| || || ||||| | |||| || |||||||||||||||| ||| |||| ||| | Sbjct 2395 ATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGC 2336 Query 1666 AGTTGGACTGCCAGTCCCTTTGGGCCCCAATGAGTTCCTTCCAGTGCTTCATTTTCAGAT 1725 | || ||||| |||| | ||| || || | || | | | ||||| | | | || Sbjct 2335 A-TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAAT 2277 Query 1726 AATGTGGGCTAATGTCATCAATGACGTTATATTCCACGTCATTTGAATAAACCCTGGAAT 1785 || ||| | ||||||||||||||||| | |||| || || || | ||| Sbjct 2276 AAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAAT 2217 Query 1786 TGAAATCCA-AGTGTCCACTAAGATAATTATGGACTCCTAATGAACGAGCCCACATTGTC 1844 | ||||||| | | ||| | | ||||||||| || || |||| ||||| | ||| Sbjct 2216 TCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCCAAACTGTT 2158 Query 1845 TTCCC 1849 || || Sbjct 2157 TTACC 2153 >seq4295 Length=67413 Score = 77.0 bits (84), Expect = 5e-11 Identities = 233/353 (66%), Gaps = 13/353 (4%) Strand=Plus/Minus Query 1502 GGGGGAGTTGAGGAAGACGAATTGCGCATTTCGAAGGGTCCAATT--TCTAAGTGATGCG 1559 ||||| || | ||||| ||||| ||||||| | ||||| || || |||| | Sbjct 46949 GGGGGTGTCGGCGAAGAAGAATTCTGCATTTCCTAATGTCCATTTCTTCAAAGTTAAA-- 46892 Query 1560 TTTTCCTCTTTGTCGAGGAAGTCTTTATAGCTGGACCCTTC---CCCTGGATTACAGAGC 1616 ||| |||| ||||| || ||||||| || || || |||||| ||||| Sbjct 46891 TTTATATCTTGTTCGAGAAAAGCTTTATACGAACACTCTGGTGTCCTTGGATTGTAGAGC 46832 Query 1617 ACGATTGAAGGAACTCCACCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGGACTGC 1676 |||||| | || | ||| |||||||||||| |||| || ||||| || || || | | Sbjct 46831 ACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTGGCATTTGAGTTC 46772 Query 1677 CAGTCCCTTTGGGCCCCAATGAGTTCCTTCCAGTGCTTCATTTTCAGATAATGTGGGCTA 1736 || | |||||| ||||||| || || || | || | | || ||| | | Sbjct 46771 CAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAATAGGATAGAGAT 46712 Query 1737 ATGTCATCAATGACGTTATATTCCA--CGTCATTTGAATAAACCCTGGAATTGAAATCCA 1794 | |||||| || ||||| || ||| | | ||| ||| | | ||||| ||||||| Sbjct 46711 ACGTCATCTATAACGTTGTA--CCATGCATTATTCGAAAATGATTTCGAATTAAAATCCA 46654 Query 1795 AG-TGTCCACTAAGATAATTATGGACTCCTAATGAACGAGCCCACATTGTCTT 1846 | | ||| || | || ||||| | ||| || || ||||| |||||||| Sbjct 46653 TGAAGCCCATTATG-TAGTTATGTGGGCATAAAGACCGTGCCCATATTGTCTT 46602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8433571220620