Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_013017.1 Length=2386 Score E Sequences producing significant alignments: (Bits) Value seq3439 102 1e-18 seq3283 98.7 1e-17 seq22495 93.3 6e-16 seq54129 87.8 3e-14 seq35612 84.2 3e-13 seq5745 80.6 4e-12 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1320 TTTATATGAGGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAAT 1379 |||||| || | | || || ||||||| || | ||| |||| || ||||||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1380 TTGAACCGGTTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCACCCATGAACTC 1439 |||||| ||||| ||||| |||| |||| ||||| | ||||| || | ||||| Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1440 CTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACGTTATACCATGC 1493 | | | || ||| | ||||| ||| |||||||| ||||||||||||||||| Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1494 GTCATT 1499 ||||| Sbjct 799 ATCATT 794 >seq3283 Length=49157 Score = 98.7 bits (108), Expect = 1e-17 Identities = 133/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1320 TTTATATGAGGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAAT 1379 |||||| || || || || |||||||| || | ||| |||| || ||||||||||| Sbjct 2299 TTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 2240 Query 1380 TTGAACCGGTTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCACCCATGAACTC 1439 |||||| ||||||||||| |||| ||| ||||| | ||||| || | ||||| Sbjct 2239 TTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTG 2180 Query 1440 CTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACGTTATACCATGC 1493 | | | || ||| | ||||| ||| || || || ||||||||||||||||| Sbjct 2179 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGC 2120 Query 1494 GTCATT 1499 ||||| Sbjct 2119 ATCATT 2114 >seq22495 Length=567 Score = 93.3 bits (102), Expect = 6e-16 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1320 TTTATATGAGGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAAT 1379 |||||| || ||| || || |||||||| || | ||| || | || |||| |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1380 TTGAACCGGTTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCACCCATGAACTC 1439 |||||| ||||| ||||| |||| ||| ||||||| ||||| || | ||||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1440 CTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACGTTATACCATGC 1493 | | | || ||| | ||||| ||| | ||||| ||||||||||||||||| Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1494 GTCATT 1499 ||||| Sbjct 206 ATCATT 201 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1336 GGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAATTTGAACCGGTTTCCCG 1395 || || |||||||| || | ||| |||| || |||||||||||||||| ||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1396 TATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCACCCATGAACTCCT--TAAAG--TGTT- 1450 || |||| ||| || |||| | ||||| || | ||||| | ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1451 -TCAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCGTCATT 1499 | | ||||| ||| ||||| || ||||||||||||||| | ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq35612 Length=1588 Score = 84.2 bits (92), Expect = 3e-13 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1320 TTTATATGAGGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAAT 1379 |||||| || ||| || || |||||||| || | ||| |||| |||||||||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1380 TTGAACCGGTTTCCCGTATTTTGTGTTGCTTTGCCA 1415 |||||| ||||| ||||| |||| |||| ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq5745 Length=45059 Score = 80.6 bits (88), Expect = 4e-12 Identities = 132/190 (69%), Gaps = 9/190 (5%) Strand=Plus/Plus Query 1319 CTTTATATGAGGAATTTGGACCT---GGATTGCAGAGGAAGATTGTTGGGATGCCGCCTT 1375 ||||||| || ||| |||||| |||||||| | | ||| ||| || || |||| Sbjct 43518 CTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACCTT 43577 Query 1376 TAATTTGAACCGGTTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCACCCATGA 1435 |||||||||| ||||| ||||| |||| || ||||| | |||||| || |||| Sbjct 43578 TAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGA 43637 Query 1436 ACTCCTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACGTTATACC 1489 ||| | | | ||||| | |||| || | ||||| ||||||||||||| Sbjct 43638 ACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTATACC 43697 Query 1490 ATGCGTCATT 1499 ||||||| || Sbjct 43698 ATGCGTCGTT 43707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7519241664480