Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_013019.1 Length=2774 Score E Sequences producing significant alignments: (Bits) Value seq3439 114 2e-22 seq3283 114 2e-22 seq22495 105 1e-19 seq4104 96.9 6e-17 seq35612 91.5 3e-15 seq442 89.7 9e-15 seq3059 87.8 3e-14 seq77518 84.2 4e-13 seq953 84.2 4e-13 seq54129 82.4 1e-12 seq30129 82.4 1e-12 seq33 82.4 1e-12 seq815 80.6 5e-12 seq80468 78.8 2e-11 >seq3439 Length=62978 Score = 114 bits (126), Expect = 2e-22 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1677 ATCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1736 ||| |||||| ||||||| | | | ||||| ||||||| || | |||| | ||||| Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1737 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGC 1796 |||||||||||||||||||| |||||||| || | |||| ||||| | | || || Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1797 CCCGATGAATTCCTTAAAGTGCT------TGAAATAATCCGGATCAACGTCATCAATGAC 1850 || | ||| | | | | |||| | ||||||| |||| || ||||| ||||| Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1851 GTTGTACCACGCATCATT 1868 ||| ||||| |||||||| Sbjct 811 GTTATACCATGCATCATT 794 >seq3283 Length=49157 Score = 114 bits (126), Expect = 2e-22 Identities = 146/199 (73%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 1677 ATCCAAGAACTCTTTATAGC-TTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAA 1735 |||||||||| ||||||| |||| | ||||| |||||||| || | |||| | |||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGA-TCAGGTCCAGGATTGCAAAGTACGATACTTGGAA 2253 Query 1736 TTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGG 1795 | |||||||||||||||||||| || ||||| || | ||| ||||| | | || | Sbjct 2252 TCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTG 2193 Query 1796 CCCCGATGAATTCCTTAAAGTGCT------TGAAATAATCCGGATCAACGTCATCAATGA 1849 | || | ||| | | | | |||| | ||||||| |||| ||||| || |||| Sbjct 2192 CGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGA 2133 Query 1850 CGTTGTACCACGCATCATT 1868 |||| ||||| |||||||| Sbjct 2132 CGTTATACCATGCATCATT 2114 >seq22495 Length=567 Score = 105 bits (116), Expect = 1e-19 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1677 ATCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1736 ||| ||||| ||||||| | | | ||||| |||||||| || | |||| | |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1737 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGC 1796 |||| ||||||||||||||| |||||||| || | ||| ||||||| | || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1797 CCCGATGAATTCCTTAAAGTGCT------TGAAATAATCCGGATCAACGTCATCAATGAC 1850 || | ||| | | | | |||| | ||||||| |||| | |||||| ||||| Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1851 GTTGTACCACGCATCATT 1868 ||| ||||| |||||||| Sbjct 218 GTTATACCATGCATCATT 201 >seq4104 Length=64936 Score = 96.9 bits (106), Expect = 6e-17 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1677 ATCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1736 |||||||||| ||||||| | | | |||||| |||||||| || | |||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1737 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTT 1769 |||||||||||||||||||| |||||||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq35612 Length=1588 Score = 91.5 bits (100), Expect = 3e-15 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1677 ATCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1736 ||||||||| ||||||| | | | ||||| |||||||| || | |||| | ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1737 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCA 1784 |||||||||||||||||||| |||||||| || | |||| ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq442 Length=237535 Score = 89.7 bits (98), Expect = 9e-15 Identities = 140/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 1677 ATCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1736 ||||||||| ||||||| | | || ||||| |||||||| || |||| | ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1737 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGC 1796 |||||||||||||||||| |||||||| || | ||| ||| ||| | ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1797 CCCGATGAATTCCTTAAAGTGCT------TGAAATAATCCGGATCAACGTCATCAATGAC 1850 || | ||| | | | | |||| | ||||||| || | ||||| || || || Sbjct 22870 GCCTACGAACTGTTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAAC 22928 Query 1851 GTTGTACCACGCATCATT 1868 ||| |||| |||||||| Sbjct 22929 GTTATACC-TGCATCATT 22945 >seq3059 Length=182465 Score = 87.8 bits (96), Expect = 3e-14 Identities = 126/178 (71%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 1677 ATCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1736 |||||||||| ||||| | | | | ||||| |||||||| || | |||| | ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1737 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGC 1796 |||||||||||||||| ||| |||||||| || | ||| | ||||| | || || Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGC 20328 Query 1797 CCCGATGAATTCCTTAAAGTGCT------TGAAATAATCCGGATCAACGTCATCAATG 1848 || | ||| | | | | |||| | ||||||| |||| ||||| |||||| Sbjct 20327 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq77518 Length=14724 Score = 84.2 bits (92), Expect = 4e-13 Identities = 168/246 (68%), Gaps = 11/246 (4%) Strand=Plus/Minus Query 1633 GCATTCTGTAAAGCCCATT-TTTTAAGTGCGCTATTTTTCTCTTCATCCAAGAACTCTTT 1691 ||||| ||||||| ||| |||| | | | |||| ||| ||||||||| |||| Sbjct 2478 GCATTTTGTAAAGTCCACGATTTTCAATTTGA-ATTTGAATCTAAATCCAAGAATGCTTT 2420 Query 1692 ATAGCTTGAGTTGGGTCCT---GGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1748 ||| | | | || || |||||||| || | |||| ||||| ||||||||||| Sbjct 2419 ATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAAT 2360 Query 1749 TTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCGATGAATTC 1808 |||||||| ||| |||| || | || || |||| | ||| || || | ||| | Sbjct 2359 TTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTG 2300 Query 1809 CTTAAAGTGCT------TGAAATAATCCGGATCAACGTCATCAATGACGTTGTACCACGC 1862 | | | |||| | |||||| | ||| || |||||||||||||| |||||||| Sbjct 2299 TTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGC 2240 Query 1863 ATCATT 1868 || || Sbjct 2239 GTCGTT 2234 >seq953 Length=224861 Score = 84.2 bits (92), Expect = 4e-13 Identities = 137/198 (69%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 1677 ATCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1736 ||| ||||| ||||||| | | | ||||| |||||||| | | |||| | ||||| Sbjct 1812 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAAT 1871 Query 1737 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGC 1796 |||||||||||||||| || |||||||| || | ||| ||||| | | || | Sbjct 1872 CCCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTAC 1931 Query 1797 CCCGATGAATTCCTTAAAGTGCT------TGAAATAATCCGGATCAACGTCATCAATGAC 1850 || | ||| | | | | | || | ||||||| |||| ||||| || || || Sbjct 1932 GCCTACGAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAAC 1991 Query 1851 GTTGTACCACGCATCATT 1868 ||| ||||| |||||||| Sbjct 1992 GTTATACCATGCATCATT 2009 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1705 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCG 1764 ||||| |||||||| || | |||| | ||||| |||||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1765 TATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCGATGAATTCCTTAAAGTGCT----- 1819 || || | ||| || |||| || || || | ||| | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1820 -TGAAATAATCCGGATCAACGTCATCAATGACGTTGTACCACGCATCATT 1868 | ||||||| |||| || || || |||||||| ||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq30129 Length=3650 Score = 82.4 bits (90), Expect = 1e-12 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1677 ATCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1736 |||||||||| ||| ||| | | | ||||| |||||||| || | |||| | ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1737 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTT 1769 |||||||||||||||||| | |||||||| || Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTT 2435 >seq33 Length=454124 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1708 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1767 || |||||||| || | |||| ||||| |||| ||||||||||||||| |||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1768 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCGATGAATTCCTTAAAGTGCT------TG 1821 || | || ||||||| | || | || | ||| | | | | || | | Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1822 AAATAATCCGGATCAACGTCATCAATGACGTTGTACCACGCATCATT 1868 |||||| | ||| ||||||||||||||||| |||||||| || || Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq815 Length=151552 Score = 80.6 bits (88), Expect = 5e-12 Identities = 137/198 (69%), Gaps = 7/198 (4%) Strand=Plus/Minus Query 1677 ATCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1736 || ||| ||| ||||||| | | | ||||| |||||||| || | ||| | ||||| Sbjct 85451 ATTCAATAACGTTTTATAGGATAA-TCAGGTCCAGGATTGCAAAGTACAATACTTGGAAT 85393 Query 1737 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGC 1796 ||||||||||||||| | || ||| |||| || | ||| | ||||| | || || Sbjct 85392 CCCGCCTTTAATTTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGC 85333 Query 1797 CCCGATGAATTCCTTAAAGTGCT------TGAAATAATCCGGATCAACGTCATCAATGAC 1850 || | ||| | | | | | || | ||||||| | || ||||| || ||||| Sbjct 85332 GCCTACGAACTATTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGAC 85273 Query 1851 GTTGTACCACGCATCATT 1868 ||| ||||| |||||||| Sbjct 85272 GTTATACCATGCATCATT 85255 >seq80468 Length=4946 Score = 78.8 bits (86), Expect = 2e-11 Identities = 138/200 (69%), Gaps = 11/200 (6%) Strand=Plus/Plus Query 1677 ATCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1736 || |||||| ||||||| | | | ||||| ||||||| || | |||| | ||||| Sbjct 4238 ATTCAAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 4297 Query 1737 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCA--GTCCCTTTGG 1794 |||||||||||| ||||| || |||||||| || || ||| | ||| || | || Sbjct 4298 TCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATTGGCCTACCATTGTGC---TGT 4354 Query 1795 GCCCCGATGAATTCCTTAAAGTGCT------TGAAATAATCCGGATCAACGTCATCAATG 1848 || || | ||| | | | | |||| | ||||||| | | ||||| | ||| Sbjct 4355 GCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTTGAAGGGACGTCGTTGATG 4414 Query 1849 ACGTTGTACCACGCATCATT 1868 ||||| ||||| |||| ||| Sbjct 4415 ACGTTATACCATGCATAATT 4434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8756218644525