Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_013022.2 Length=2791 Score E Sequences producing significant alignments: (Bits) Value seq490 116 7e-23 seq5745 107 3e-20 seq3283 107 3e-20 seq1993 100 5e-18 seq77518 95.1 2e-16 seq22495 78.8 2e-11 >seq490 Length=137872 Score = 116 bits (128), Expect = 7e-23 Identities = 204/292 (70%), Gaps = 14/292 (5%) Strand=Plus/Minus Query 1718 ATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTACA 1777 |||||| |||| || | |||||||||||||||||||| | |||||| | ||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1778 ATTGCTTTGCCAGTCCTTCTGGGCCCCCATGAACTCTTTAAAGTGCTTT--------AGG 1829 || ||||||| | || |||||| || | ||| | | ||||| || Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1830 TATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTG-TTGCTATACACCTTTGG 1888 | ||| || ||||||||| |||||||||||||| | ||| ||| | | |||| Sbjct 70498 TGCTGGAGG--GACGTCATCTATGACGTTATACCATG-ACTCATTGGAAAATGTCTTTCT 70442 Query 1889 ACTCAGGTCCA-AATGCCCACACAGATAATTATGTGGTCCTAAGGATCTAGCCCAAACTG 1947 | | | |||| || ||||| | || ||||||||||| || || ||||||||| | | Sbjct 70441 ATTGAAATCCATAACGCCCATAAAG-TAATTATGTGGACCCAAACTTCTAGCCCATTCAG 70383 Query 1948 TTTTACCTATTCTACTTGGCCCTTCTATAACTATACTTATGGGCCTCTCTGG 1999 | || || | |||| ||| |||||||||| || | |||||||| ||||| Sbjct 70382 TCTTCCCAAGTCTAGATGGACCTTCTATAATTAAAGACATGGGCCTATCTGG 70331 >seq5745 Length=45059 Score = 107 bits (118), Expect = 3e-20 Identities = 202/290 (70%), Gaps = 14/290 (5%) Strand=Plus/Plus Query 1713 CCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTA- 1771 || |||||||| | | |||| || || |||||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1772 TTTACAATTGCTTTGCCAGTCCTTCTGGGCCCCCATGAACTCTT--TAAAGTGCTTTAGG 1829 ||| || ||| | | | | | | || || || ||||||| || ||| || |||| Sbjct 43601 TTTGCATTTGACTGCCAATTGCAT-TGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1830 TAT------TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACC 1883 || ||| || || ||||||||||||||||||||| || ||| || Sbjct 43660 TAAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1884 TTTGGACTCAGGTCCA-AATGCCCACACAGATAATTATGTGGTCCTAAGGATCTAGCCCA 1942 || | | ||| |||| || ||||| | |||||||||||| || || || | ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCATT-ATATAATTATGTGGACCCAACGAACGTGCCCA 43776 Query 1943 AACTGTTTTACCTATTCTACTTGGCCCTTCTATAACTATACTTATGGGCC 1992 |||||||||||| |||||| || | | | |||| || ||| ||| || Sbjct 43777 AACTGTTTTACCGATTCTAGAAGGTCTTGCAATAATAATGCTTTTGGACC 43826 >seq3283 Length=49157 Score = 107 bits (118), Expect = 3e-20 Identities = 198/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 1712 TCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1771 ||| |||||||| || | |||| | || || || ||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1772 TTTACAATTGCTTTGCCAGTCCTTCTGGGCCCCCATGAACTCTTTAAAGTGCT------T 1825 || |||| ||||| | ||| || || | ||||| || | | |||| | Sbjct 2221 CTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1826 TAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACCTT 1885 || || | || |||||| || |||||||||||||| ||| || ||| || Sbjct 2161 TAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 2102 Query 1886 TGGACTCAGGTCCA-AATGCCCACACAGATAATTATGTGGTCCTAAGGATCTAGCCCAAA 1944 | | | | |||| || |||| | || || ||||| ||||| || | |||||| Sbjct 2101 GGAATTAAAATCCATAAATCCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 2043 Query 1945 CTGTTTTACCTATTCTACTTGGCCCTTCTATAACTATACTTATGGGCC 1992 ||||||| |||||||| ||| ||||| |||| || || ||||||| Sbjct 2042 CTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq1993 Length=81530 Score = 100 bits (110), Expect = 5e-18 Identities = 203/293 (69%), Gaps = 15/293 (5%) Strand=Plus/Minus Query 1710 TCTCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCG 1769 || || |||||||| || | |||| || || || |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1770 TA-TTTACAATTGCTTTGCCAGTCCTTCTGGGCCCCCATGAACTCTTTAAAGTGCTTT-- 1826 || ||| || ||| | | | | | | || || | | ||||| || | | || ||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGT-TGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1827 ----AGGTAT--TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATAC 1880 | || ||| || |||||||||||||||||||||||| || |||| || Sbjct 74287 AATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTTGTTCGATTAT 74230 Query 1881 ACCTTTGGACTCAGGTCCA-AATGCCCACACAGATAATTATGTGGTCCTAAGGATCTAGC 1939 || | | ||| |||| || ||||| | |||||||||||| || || || | | Sbjct 74229 GTTTTCGAATTCAAATCCATAAAGCCCATT-ATATAATTATGTGGACCCAACGAACGTGT 74171 Query 1940 CCAAACTGTTTTACCTATTCTACTTGGCCCTTCTATAACTATACTTATGGGCC 1992 ||||||||||||||| |||||| || ||||| |||| || || |||||| Sbjct 74170 CCAAACTGTTTTACCGATTCTAGAAGGTCCTTCAATAA-TAATTTTTTGGGCC 74119 >seq77518 Length=14724 Score = 95.1 bits (104), Expect = 2e-16 Identities = 199/289 (69%), Gaps = 17/289 (6%) Strand=Plus/Minus Query 1713 CCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTA- 1771 || |||||||| || | |||| || || || |||||||||||||||| ||| |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1772 TTTACAATTGCTTTGCCAGTCCTTCTGGGCCCCCATGAACTCTTTAAAGTGCTTT----- 1826 ||| || ||| | | |||| || || || | ||||| || | | |||||| Sbjct 2340 TTTGCATTTGACT-GTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1827 -AGGTAT--TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACC 1883 | || ||| || ||| |||||||||||||||||||| || ||| || Sbjct 2281 TAAATAAGCTGGAGG--GACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 2224 Query 1884 TTTGGACTCAGGTCCA-AATGCCCACACAGATAATTATGTGGTCCTAAGGATCTAGCCCA 1942 || | ||| |||| || ||||| | |||||||||||| || || | | ||||| Sbjct 2223 TTCAAATTCAAATCCATAAAGCCCATT-ATATAATTATGTGGACCCAACTAACGTGCCCA 2165 Query 1943 AACTGTTTTACCTATTCTACTTGGCCCTTCTATAACTATACTTATGGGC 1991 |||||||||||| |||||| || ||||| |||| || || ||||| Sbjct 2164 AACTGTTTTACCGATTCTA---GGTCCTTCAATAATAATGTTTTTGGGC 2119 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/163 (71%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1712 TCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1771 ||| |||||||| || | |||| | | || || | ||||||||||||||| |||||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1772 TTTACAATTGCTTTGCCAGTCCTTCTGGGCCCCCATGAACTCTTTAAAGTGCT------T 1825 || |||| ||||||| ||| || || | ||||| || | | |||| | Sbjct 308 CTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1826 TAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCA 1868 || || | || || |||||| |||||||||||||| ||| Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCA 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8810565383100