Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_013413.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq3439 118 2e-23 seq3283 113 8e-22 seq5745 111 3e-21 seq33 107 3e-20 seq22495 102 1e-18 seq953 102 1e-18 seq54129 96.9 6e-17 seq1993 95.1 2e-16 seq35612 87.8 3e-14 seq20728 84.2 4e-13 seq815 80.6 5e-12 seq30129 78.8 2e-11 seq3059 78.8 2e-11 >seq3439 Length=62978 Score = 118 bits (130), Expect = 2e-23 Identities = 195/282 (69%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 1688 GATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTACTTTG 1747 ||||||| || | |||| | ||||| || ||||||||||||| ||| ||||||||||||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1748 TGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTTTAAAGTGTT------TTAGGT 1801 |||| ||||||| | ||| || || | ||||| || | | || | ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1802 AATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCAATACACCTTTGGAC 1861 ||| ||| ||| ||||| |||||||||||||| |||||||| | ||| || | | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1862 TAAGATCAAGATGGCCGCACAAGTAATTATGCCTACCAAGAGATCTTGCCCACATGGTTT 1921 ||| ||| | | || | ||| || || || | || | ||||| |||| Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTT 717 Query 1922 TACCAGTTCTAGAAGCACCTTCAATCACAATACTTATGGGCC 1963 | || |||| || | |||||||| | ||| || ||||||| Sbjct 716 TCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 675 >seq3283 Length=49157 Score = 113 bits (124), Expect = 8e-22 Identities = 198/289 (69%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 1681 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCG 1740 || || |||||||| || | |||| | ||||| || ||||||||||||| ||| || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1741 TACTTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1795 ||||||| ||| ||||||| | ||| || || | ||||| || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1796 -TTAGGTAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCAATACACC 1854 ||| |||| ||| |||||| || |||||||||||||| |||||||| | ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1855 TTTGGACTAAGATCAAGATGGCCGCACAAGTAATTATGCCTACCAAGAGATCTTGCCCAC 1914 || | | ||| ||| | | || | ||| || || || | || | ||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1915 ATGGTTTTACCAGTTCTAGAAGCACCTTCAATCACAATACTTATGGGCC 1963 ||||| || |||| || | |||||||| | ||| || ||||||| Sbjct 2043 GCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq5745 Length=45059 Score = 111 bits (122), Expect = 3e-21 Identities = 198/286 (69%), Gaps = 6/286 (2%) Strand=Plus/Plus Query 1684 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTAC 1743 || |||||||| | | |||| ||||| |||||||||||||||| ||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1744 TTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTT--TAAAGTGTTTTAGGT 1801 |||| || ||||||| | || || || ||||||| || ||| || ||||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1802 A---ATGC-GGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCAATACACCTTT 1857 | | || || || ||||||||||||||||||||| || || || | || || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1858 GGACTAAGATCAAGATGGCCGCACAAGTAATTATGCCTACCAAGAGATCTTGCCCACATG 1917 | | | | ||| | | ||| | |||||||| ||| | || | |||||| | Sbjct 43721 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACT 43780 Query 1918 GTTTTACCAGTTCTAGAAGCACCTTCAATCACAATACTTATGGGCC 1963 |||||||| ||||||||| | | |||| | ||| ||| ||| || Sbjct 43781 GTTTTACCGATTCTAGAAGGTCTTGCAATAATAATGCTTTTGGACC 43826 >seq33 Length=454124 Score = 107 bits (118), Expect = 3e-20 Identities = 198/286 (69%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 1684 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTAC 1743 || |||||||| || | |||| ||||| || | ||||||||||| ||| ||||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1744 TTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTT--TAAAGTGTTTTAGGT 1801 |||| || ||||| | | ||| | || | ||||| || ||| | ||||| | Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1802 A---ATGC-GGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCAATACACCTTT 1857 | | || || |||||||||||||||||||||||| || || || | || | Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1858 GGACTAAGATCAAGATGGCCGCACAAGTAATTATGCCTACCAAGAGATCTTGCCCACATG 1917 | | | | ||| | | ||| | ||||||||| ||| | || | |||||| | Sbjct 403122 GAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAACT 403063 Query 1918 GTTTTACCAGTTCTAGAAGCACCTTCAATCACAATACTTATGGGCC 1963 ||||| || ||||||||| |||||||| | ||| ||| |||||| Sbjct 403062 GTTTT-TCAATTCTAGAAGGTCCTTCAATAATAATGCTTTTGGGCC 403018 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1665 TTTATATGAAGAAGATGGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAAT 1724 |||||| || || || || |||||||| || | |||| | |||| || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1725 TTGAATTGGCTTTCCGTACTTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTC 1784 ||||| ||| ||||||||||||| ||| ||||| | | ||| || || | ||||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1785 TTTAAAGTGTT------TTAGGTAATGCGGGTCGACGTCATCAATGACGTTATACCAAGC 1838 || | | || | ||| |||| ||| || |||||| |||||||||||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1839 ATCATT 1844 |||||| Sbjct 206 ATCATT 201 >seq953 Length=224861 Score = 102 bits (112), Expect = 1e-18 Identities = 136/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 1665 TTTATATGAAGAAGATGGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAAT 1724 |||||| || || || || |||||||| | | |||| | ||||| || |||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1725 TTGAATTGGCTTTCCGTACTTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTC 1784 |||||||| ||||||||||||| ||| ||||||| | ||| | || | ||||| Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1785 TT--TAA-AGTGTT---TTAGGTAATGCGGGTCGACGTCATCAATGACGTTATACCAAGC 1838 || ||| | | || ||| |||| ||| |||||| || || ||||||||||| || Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1839 ATCATT 1844 |||||| Sbjct 2004 ATCATT 2009 >seq54129 Length=2260 Score = 96.9 bits (106), Expect = 6e-17 Identities = 125/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1681 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCG 1740 || || |||||||| || | |||| | ||||| || ||||||||||||||||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1741 TACTTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTT--TAAAG--TGTT- 1795 ||||||| ||| || || | ||| || || | ||||| || ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1796 -TTAGGTAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATT 1844 ||| |||| ||| ||| || || |||||||||||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq1993 Length=81530 Score = 95.1 bits (104), Expect = 2e-16 Identities = 195/286 (68%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 1684 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTAC 1743 || |||||||| || | |||| ||||| || |||||||||||| ||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1744 TTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTT--TAAAGTGTTTTAGGT 1801 |||| || ||||||| | || || | | ||||| || ||| | ||||| | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1802 A---ATGC-GGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCAATACACCTTT 1857 | | || || |||||||||||||||||||||||| || | || | || || Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTTTTC 74224 Query 1858 GGACTAAGATCAAGATGGCCGCACAAGTAATTATGCCTACCAAGAGATCTTGCCCACATG 1917 | | | | ||| | | ||| | |||||||| ||| | || | || ||| | Sbjct 74223 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCAAACT 74164 Query 1918 GTTTTACCAGTTCTAGAAGCACCTTCAATCACAATACTTATGGGCC 1963 |||||||| ||||||||| |||||||| | ||| || |||||| Sbjct 74163 GTTTTACCGATTCTAGAAGGTCCTTCAATAATAAT-TTTTTGGGCC 74119 >seq35612 Length=1588 Score = 87.8 bits (96), Expect = 3e-14 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1665 TTTATATGAAGAAGATGGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAAT 1724 |||||| || || || || |||||||| || | |||| | |||||||| |||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1725 TTGAATTGGCTTTCCGTACTTTGTGTTGCTTTGCCAAT 1762 ||||| ||| ||||||||||||| |||| ||||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCAAT 1588 >seq20728 Length=3653 Score = 84.2 bits (92), Expect = 4e-13 Identities = 105/143 (73%), Gaps = 7/143 (5%) Strand=Plus/Plus Query 1708 GGAATGCCACCTTTAATTTGAATTGGCTTTCCGTACTTTGTGTTGCTTTGCCAATCCCTC 1767 ||||| || ||||||||||||| ||| ||||||||||||| ||| |||| | | | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1768 TGGGCCCCCATGAACTCTTTAAAGTGTT------TTAGGTAATGCGGGTCGACGTCATCA 1821 || || || | ||||| || | | || | ||| |||| ||| ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1822 ATGACGTTATACCAAGCATCATT 1844 ||||||||||| || |||||||| Sbjct 1561 ATGACGTTATATCATGCATCATT 1583 >seq815 Length=151552 Score = 80.6 bits (88), Expect = 5e-12 Identities = 191/289 (66%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 1681 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCG 1740 || || |||||||| || | ||| | ||||| || |||||||||||| || ||| || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1741 TACTTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1795 ||||||| ||| | ||| | | ||| || || | ||||| || | | | | Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1796 -TTAGGTAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCAATACACC 1854 ||| |||| | | |||||| || |||||||||||||| |||||||| | ||| Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 85245 Query 1855 TTTGGACTAAGATCAAGATGGCCGCACAAGTAATTATGCCTACCAAGAGATCTTGCCCAC 1914 || | | ||| ||| | | || | ||| || || | || | | | ||||| Sbjct 85244 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCCCAT 85185 Query 1915 ATGGTTTTACCAGTTCTAGAAGCACCTTCAATCACAATACTTATGGGCC 1963 | |||| || |||| || | |||||||| | ||| || ||||||| Sbjct 85184 GTTATTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 85136 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 1681 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCG 1740 || || |||||||| || | |||| | ||||| || ||||||||||||| | | |||||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1741 TACTTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTT 1786 ||||||| ||| ||||||| | ||| || || | ||||| || Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTT 2476 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 107/150 (71%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 1681 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCG 1740 || || |||||||| || | |||| | ||||| || ||||||||||||||||| |||||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1741 TACTTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1795 || |||| ||| | ||| | | ||| || || | ||||| || | | || | Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 20300 Query 1796 -TTAGGTAATGCGGGTCGACGTCATCAATG 1824 ||| |||| ||| |||||| |||||| Sbjct 20299 ATTAAATAATTCGGAGGGACGTCGTCAATG 20270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8686130783330