Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_013414.1 Length=2733 Score E Sequences producing significant alignments: (Bits) Value seq3439 123 4e-25 seq3283 107 3e-20 seq22495 100 5e-18 seq953 93.3 7e-16 seq815 91.5 3e-15 seq54129 89.7 9e-15 seq20728 87.8 3e-14 seq5745 86.0 1e-13 seq33 82.4 1e-12 >seq3439 Length=62978 Score = 123 bits (136), Expect = 4e-25 Identities = 185/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 1672 GAACTCTTTATATGACGATTTCGGTCCTTGATTACAGAGAAAGATGGTGGGGATACCACC 1731 |||| |||||| || ||| ||||| |||| || || | ||| | || || || || Sbjct 985 GAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCC 926 Query 1732 TTTAATTTGTGTGGGCTTTCCGTATTTGACGTTACTTTGCCAGTCACGTTGTGCGCCCAT 1791 ||||||||| || |||||||| || |||| ||||| | || |||||||| | Sbjct 925 TTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTAC 866 Query 1792 GAATTCTTTGAAATGTTTC------AAATAATGCGGATCGACGTCATCAATGACGTTATA 1845 ||| | || |||| ||| ||||||| |||| ||| ||||| ||||||||||| Sbjct 865 GAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATA 806 Query 1846 CCATGCATCGTTGGAATACACTTTCGGACTAAGGTCCAAATGGCCGCAAAGATAATTGTG 1905 ||||||||| || || ||| ||| | | ||| |||| | || | || ||||| Sbjct 805 CCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTG 746 Query 1906 CGGCCCTAATGCACGAGCCCATG 1928 || ||||||| ||||||||||| Sbjct 745 TGGGCCTAATGAACGAGCCCATG 723 >seq3283 Length=49157 Score = 107 bits (118), Expect = 3e-20 Identities = 168/241 (70%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 1694 GGTCCTTGATTACAGAGAAAGATGGTGGGGATACCACCTTTAATTTGTGTGGGCTTTCCG 1753 ||||| |||| || || | ||| | || || || ||||||||||| || || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1754 TATTTGACGTTACTTTGCCAGTCACGTTGTGCGCCCATGAATTCTTTGAAATGTTTC--- 1810 || || | || ||||| | || |||||||| | ||| | || |||| ||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1811 ---AAATAATGCGGATCGACGTCATCAATGACGTTATACCATGCATCGTTGGAATACACT 1867 ||||||| |||| |||||| || |||||||||||||||||||| || || ||| | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1868 TTCGGACTAAGGTCCAAATGGCCGCAAAGATAATTGTGCGGCCCTAATGCACGAGCCCAT 1927 || | | ||| |||| | || | || ||||| || ||||||| |||||||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1928 G 1928 | Sbjct 2043 G 2043 >seq22495 Length=567 Score = 100 bits (110), Expect = 5e-18 Identities = 172/250 (69%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 1678 TTTATATGACGATTTCGGTCCTTGATTACAGAGAAAGATGGTGGGGATACCACCTTTAAT 1737 |||||| || | | ||||| |||| || || | ||| | | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1738 TTGTGTGGGCTTTCCGTATTTGACGTTACTTTGCCAGTCACGTTGTGCGCCCATGAATTC 1797 ||| || |||||||| || | || ||||||| || |||||||| | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1798 TTTGAAATGTTTC------AAATAATGCGGATCGACGTCATCAATGACGTTATACCATGC 1851 || |||| ||| ||||||| |||| || |||||| ||||||||||||||||| Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1852 ATCGTTGGAATACACTTTCGGACTAAGGTCCAAATGGCCGCAAAGATAATTGTGCGGCCC 1911 ||| || || ||| ||| | | ||| |||||| || | || ||||| || || Sbjct 206 ATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCC 147 Query 1912 TAATGCACGA 1921 ||||| |||| Sbjct 146 TAATGAACGA 137 >seq953 Length=224861 Score = 93.3 bits (102), Expect = 7e-16 Identities = 178/260 (68%), Gaps = 12/260 (5%) Strand=Plus/Plus Query 1678 TTTATATGACGATTTCGGTCCTTGATTACAGAGAAAGATGGTGGGGATACCACCTTTAAT 1737 |||||| || | | ||||| |||| || | | ||| | || || || |||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1738 TTGTGTGGGCTTTCCGTATTTGACGTTACTTTGCCAGTCACGTTGTGCGCCCATGAATTC 1797 ||| | | |||||||| || | || ||||| | || ||| |||| | ||| | Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1798 TTTGAAATGTTTC------AAATAATGCGGATCGACGTCATCAATGACGTTATACCATGC 1851 || ||| || ||||||| |||| |||||| || || |||||||||||||| Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1852 ATCGTTGGAATACACTTTCGGACTAAGGTCC--AAATGGCCGCA-AAGATAATTGTGCGG 1908 ||| || || ||| ||||| | ||| ||| |||| | || | || ||||| || Sbjct 2004 ATCATTTGAGTACGTTTTCGAATTAAAATCCATAAAT---CTCATTATGTAGTTGTGTGG 2060 Query 1909 CCCTAATGCACGAGCCCATG 1928 ||||||| ||||||||||| Sbjct 2061 GCCTAATGAACGAGCCCATG 2080 >seq815 Length=151552 Score = 91.5 bits (100), Expect = 3e-15 Identities = 165/242 (68%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 1694 GGTCCTTGATTACAGAGAAAGATGGTGGGGATACCACCTTTAATTTGTGTGGGCTTTCCG 1753 ||||| |||| || || | || | || || || ||||||||||| ||| ||| || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1754 TATTTGACGTTACTTTGCCAGTCACGTTGTGCGCCCATGAATTCTTTGAAATGTTTC--- 1810 || || | || | ||||| || |||||||| | ||| | || ||| ||| Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1811 ---AAATAATGCGGATCGACGTCATCAATGACGTTATACCATGCATCGTTGGAATACACT 1867 ||||||| | || |||||| || |||||||||||||||||||| || || ||| | Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 85245 Query 1868 TTCGGACTAAGGTCCAAATGGCCGCAAAGATAATTGTGCGGCCCTAATGCACGAGCCCAT 1927 || | | ||| |||| | || | || ||||| | |||||| |||||||||| Sbjct 85244 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCCCAT 85185 Query 1928 GT 1929 || Sbjct 85184 GT 85183 >seq54129 Length=2260 Score = 89.7 bits (98), Expect = 9e-15 Identities = 164/241 (68%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 1694 GGTCCTTGATTACAGAGAAAGATGGTGGGGATACCACCTTTAATTTGTGTGGGCTTTCCG 1753 ||||| |||| || || | ||| | || || || ||||||||||| | || |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1754 TATTTGACGTTACTTTGCCAGTCACGTTGTGCGCCCATGAATTCTTTGAAATGTTTC--- 1810 || || | || || |||| | |||||||| | ||| | || | |||| ||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1811 ---AAATAATGCGGATCGACGTCATCAATGACGTTATACCATGCATCGTTGGAATACACT 1867 ||||||| |||| ||| || || ||||||||||||||| |||| || || || | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTT 2081 Query 1868 TTCGGACTAAGGTCCAAATGGCCGCAAAGATAATTGTGCGGCCCTAATGCACGAGCCCAT 1927 || | | ||| | || | || | || ||||| | | ||||| |||||||||| Sbjct 2080 TTGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCAT 2021 Query 1928 G 1928 | Sbjct 2020 G 2020 >seq20728 Length=3653 Score = 87.8 bits (96), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 13/217 (6%) Strand=Plus/Plus Query 1721 GGGATACCACCTTTAATTTGTGTGGGCTTTCCGTATTTGACGTTACTTTGCCAGTCACGT 1780 || || || ||||||||||| || |||||||| || | || |||| || || Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1781 TGTGCGCCCATGAATTCTTTGAAATGTTTC------AAATAATGCGGATCGACGTCATCA 1834 |||||||| | ||| | || |||| || ||||||| |||| ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1835 ATGACGTTATACCATGCATCGTTGGAATACACTTTCGGACTAAGGTC--CAAATGGCCGC 1892 ||||||||||| |||||||| || || ||| ||||| | ||| || |||| | | Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATAAAT---CTC 1617 Query 1893 A-AAGATAATTGTGCGGCCCTAATGCACGAGCCCATG 1928 | | || ||||| || |||||| ||||||||||| Sbjct 1618 ATTATGTAGTTGTGTGGGACTAATGAACGAGCCCATG 1654 >seq5745 Length=45059 Score = 86.0 bits (94), Expect = 1e-13 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 1721 GGGATACCACCTTTAATTTGTGTGGGCTTTCCGTATTTGACGTTACTTTGCCAGTCACGT 1780 || || |||||||||||||| || || ||||| || | || ||||| | | | Sbjct 43565 GGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCAT 43624 Query 1781 TGTGCGCCCATGAATTCTTTGAAATGTTTC------AAATAATGCGGATCGACGTCATCA 1834 ||||| || ||||| | || ||||||| |||||| ||| || ||||||| Sbjct 43625 TGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCA 43684 Query 1835 ATGACGTTATACCATGCATCGTTGGAATACACTTTCGGACTAAGGTCCAAATGGCCGCAA 1894 ||||||||||||||||| ||||| || || ||||| | | | |||| | ||| Sbjct 43685 ATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATT 43744 Query 1895 AGATAATTGTGCGGCCCTAATGCACGAGCCCA 1926 | |||||| || || || || | ||| ||||| Sbjct 43745 ATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq33 Length=454124 Score = 82.4 bits (90), Expect = 1e-12 Identities = 216/329 (66%), Gaps = 8/329 (2%) Strand=Plus/Minus Query 1606 GATGGTGTAGAATTCCGCATTCTTTAAAGCCCACAATTTGAGCGACGCATTTTGTTCCTC 1665 |||| || |||||| ||||||| ||||| |||| |||| | |||| || Sbjct 403395 GATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTAT 403336 Query 1666 GTCGAGGAACTCTTTATATGACGATTTCGGTCCTT--GATTACAGAGAAAGATGGTGGGG 1723 |||| |||| ||||||| ||| | | || || |||| || || | ||| || Sbjct 403335 ATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGA 403276 Query 1724 ATACCACCTTTAATTTGTGTGGGCTTTCCGTATTTGACGTTACTTTGCCAGTCACGTTGT 1783 || || | ||||||||| || |||||||| || | || ||||||| | ||| Sbjct 403275 ATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGT 403216 Query 1784 GCGCCCATGAATTCTTTGAAATGTTTC------AAATAATGCGGATCGACGTCATCAATG 1837 |||| | ||| | || |||| || |||||| ||| ||||||||||||| Sbjct 403215 ACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATG 403156 Query 1838 ACGTTATACCATGCATCGTTGGAATACACTTTCGGACTAAGGTCCAAATGGCCGCAAAGA 1897 ||||||||||| || ||||| || || | ||| | | | |||| | ||| | Sbjct 403155 ACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTATG 403096 Query 1898 TAATTGTGCGGCCCTAATGCACGAGCCCA 1926 ||||| || || || || | ||| ||||| Sbjct 403095 TAATTATGTGGACCCAACGAACGTGCCCA 403067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8628585566510