Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_013465.1 Length=2807 Score E Sequences producing significant alignments: (Bits) Value seq3283 116 7e-23 seq3439 107 3e-20 seq5745 96.9 6e-17 seq54129 89.7 9e-15 >seq3283 Length=49157 Score = 116 bits (128), Expect = 7e-23 Identities = 200/281 (71%), Gaps = 16/281 (6%) Strand=Plus/Minus Query 1728 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1787 ||| |||||||| || | |||| | ||||| || ||||||||||||||||| |||||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1788 -TTTACAGTTTGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1840 ||| || || | ||||| | ||| || || | ||| | | | | |||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1841 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATAC-T 1899 ||| || | || |||||| || |||||||||||||| ||| || || ||| | Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACGT 2105 Query 1900 TTTGGGCTT-AGATC--TAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCC 1956 ||||| || | ||| ||||| |||| | || ||||| ||||| || || | ||| Sbjct 2104 TTTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1957 CACACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAAT 1997 || ||||||| |||||||| |||||||||||||| ||| Sbjct 2046 CATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAAT 2006 >seq3439 Length=62978 Score = 107 bits (118), Expect = 3e-20 Identities = 193/275 (70%), Gaps = 14/275 (5%) Strand=Plus/Minus Query 1733 GATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTAC 1792 ||||||| || | |||| | ||||| || ||||||||||||||||| || ||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1793 AGTTTGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT------TAGGT 1846 ||| | ||||| | ||| || || | ||| | | | | ||||| || | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1847 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATAC-TTTTGGG 1905 | | || ||| ||||| |||||||||||||| ||| || || ||| |||||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT--TGAGTACGTTTTGGA 779 Query 1906 CTTAGA-TC--TAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCACACT 1962 ||| | || ||||| |||| | || ||||| ||||| || || | ||||| || Sbjct 778 ATTAAAATCCATAAAT-CCCATT-ATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCT 721 Query 1963 GTTTTGCCTATTCTGCTTGGGCCTTCAATAACAAT 1997 ||||| |||||||| |||||||||||||| ||| Sbjct 720 GTTTTCCCTATTCTTGATGGGCCTTCAATAATAAT 686 >seq5745 Length=45059 Score = 96.9 bits (106), Expect = 6e-17 Identities = 193/279 (69%), Gaps = 14/279 (5%) Strand=Plus/Plus Query 1729 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA- 1787 || |||||||| | | |||| ||||| |||||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1788 TTTACAGTTTGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCT--TAAAGTGCTTTAGG 1845 ||| || ||||| ||||| | || || || ||||| | | ||| || |||| Sbjct 43601 TTTGCA-TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1846 TA------TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACT 1899 || ||| || || ||||||||||||||||||||| || ||| ||| | Sbjct 43660 TAAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1900 TTTGGGCTTAGATCTA-AATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCA 1958 || | | | ||| | || ||||| | |||||| || || ||||| || | ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 Query 1959 CACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAAT 1997 |||||||| || ||||| || | | |||||| ||| Sbjct 43777 AACTGTTTTACCGATTCTAGAAGGTCTTGCAATAATAAT 43815 >seq54129 Length=2260 Score = 89.7 bits (98), Expect = 9e-15 Identities = 193/280 (69%), Gaps = 14/280 (5%) Strand=Plus/Minus Query 1728 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1787 ||| |||||||| || | |||| | ||||| || ||||||||||||| ||| || ||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1788 -TTTACAGTTTGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1840 ||| || || | || |||| | ||| || || | ||| | | | |||| Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1841 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACTT 1900 ||| || | || ||| || || |||||||||||||| || || |||| || Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTAT-GTT 2081 Query 1901 TTGGGCTTAGA--TC-TAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCC 1957 |||| ||| | || ||||| |||| | || ||||| ||| || || | |||| Sbjct 2080 TTGGAATTAAAATTCATAAAT-CCCA-TTATGTAGTTGTGTTGGCATAATGAACGAGCCC 2023 Query 1958 ACACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAAT 1997 | ||||||| |||||||| |||||||||||||| ||| Sbjct 2022 ATGCTGTTTTTCCTATTCTTGATGGGCCTTCAATAATAAT 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8861715254700