Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20]
89,515 sequences; 867,455,155 total letters
Query= NC_013467.1
Length=2814
Score E
Sequences producing significant alignments: (Bits) Value
seq3283 145 1e-31
seq3439 138 2e-29
seq54129 120 5e-24
seq5745 109 1e-20
seq1993 104 4e-19
seq20728 102 1e-18
seq77518 98.7 2e-17
seq80468 96.9 6e-17
seq953 96.9 6e-17
seq815 96.9 6e-17
seq22495 95.1 2e-16
seq490 95.1 2e-16
>seq3283
Length=49157
Score = 145 bits (160), Expect = 1e-31
Identities = 212/290 (73%), Gaps = 16/290 (6%)
Strand=Plus/Minus
Query 1729 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1788
||| |||||||| || | |||| | ||||| || ||||||||||||||||| ||||||||
Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222
Query 1789 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1841
||| || |||| ||||| | ||| || || | ||| | | | | ||||
Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163
Query 1842 TTAAGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATAC-T 1900
|||| || | || |||||| || |||||||||||||| ||| ||| || ||| |
Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACGT 2105
Query 1901 TTTGGGCTT-AAATC--TAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCC 1957
||||| || ||||| ||||| |||| || ||||| |||||||| ||||| | |||
Sbjct 2104 TTTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047
Query 1958 CATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGG 2007
||| ||||||| || ||||| |||||||||||||| ||| |||||
Sbjct 2046 CATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1997
>seq3439
Length=62978
Score = 138 bits (152), Expect = 2e-29
Identities = 205/284 (72%), Gaps = 14/284 (5%)
Strand=Plus/Minus
Query 1734 GATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTAC 1793
||||||| || | |||| | ||||| || ||||||||||||||||| || ||||| ||
Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897
Query 1794 AGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT------TAAGT 1847
||||| ||||| | ||| || || | ||| | | | | ||||| ||| |
Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837
Query 1848 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATAC-TTTTGGG 1906
| | || ||| ||||| |||||||||||||| ||| ||| || ||| ||||||
Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT--TGAGTACGTTTTGGA 779
Query 1907 CTTAAA-TC--TAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCCCATACT 1963
||||| || ||||| |||| || ||||| |||||||| ||||| | |||||| ||
Sbjct 778 ATTAAAATCCATAAAT-CCCAT-TATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCT 721
Query 1964 GTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGG 2007
||||| || ||||| |||||||||||||| ||| |||||
Sbjct 720 GTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 677
>seq54129
Length=2260
Score = 120 bits (132), Expect = 5e-24
Identities = 205/289 (71%), Gaps = 14/289 (5%)
Strand=Plus/Minus
Query 1729 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1788
||| |||||||| || | |||| | ||||| || ||||||||||||| ||| || |||||
Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199
Query 1789 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1841
||| || |||| || |||| | ||| || || | ||| | | | ||||
Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140
Query 1842 TTAAGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATACTT 1901
|||| || | || ||| || || |||||||||||||| || ||| |||| ||
Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTAT-GTT 2081
Query 1902 TTGGGCTTAAA--TC-TAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCCC 1958
|||| ||||| || ||||| |||| || ||||| ||| ||| ||||| | ||||
Sbjct 2080 TTGGAATTAAAATTCATAAAT-CCCA-TTATGTAGTTGTGTTGGCATAATGAACGAGCCC 2023
Query 1959 ATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGG 2007
|| ||||||| || ||||| |||||||||||||| ||| |||||
Sbjct 2022 ATGCTGTTTTTCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1974
>seq5745
Length=45059
Score = 109 bits (120), Expect = 1e-20
Identities = 183/258 (71%), Gaps = 14/258 (5%)
Strand=Plus/Plus
Query 1730 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA- 1788
|| |||||||| | | |||| ||||| |||||||||||||||||||| || |||||
Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600
Query 1789 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCT--TAAAGTGCTTTAAG 1846
||| || || || ||||| | || || || ||||| | | ||| || |||||
Sbjct 43601 TTTGCA-TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659
Query 1847 TA------TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATACT 1900
|| ||| || || ||||||||||||||||||||| || || ||| |
Sbjct 43660 TAAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717
Query 1901 TTTGGGCTTAAATCTA-AATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCCCA 1959
|| | | ||||| | || ||||| || ||| |||||||| ||||| || | |||||
Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCA 43776
Query 1960 TACTGTTTTGCCGATTCT 1977
|||||||| ||||||||
Sbjct 43777 AACTGTTTTACCGATTCT 43794
>seq1993
Length=81530
Score = 104 bits (114), Expect = 4e-19
Identities = 194/278 (70%), Gaps = 14/278 (5%)
Strand=Plus/Minus
Query 1727 TCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCG 1786
|| || |||||||| || | |||| ||||| || |||||||||||||||| || |||
Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347
Query 1787 TA-TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTT-- 1843
|| ||| || ||| | ||||| | || || | | ||| | | | | || |||
Sbjct 74346 TACTTTGCATTTG-ACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288
Query 1844 ----AAGTAT--TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTAT 1897
|| || ||| || |||||||||||||||||||||||| || | || |||
Sbjct 74287 AATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTTGTTCGATTAT 74230
Query 1898 ACTTTTGGGCTTAAATCTA-AATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGC 1956
||| | | ||||| | || ||||| || ||| |||||||| ||||| || | |
Sbjct 74229 GTTTTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGT 74171
Query 1957 CCATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAA 1994
||| |||||||| |||||||| || ||||||||||
Sbjct 74170 CCAAACTGTTTTACCGATTCTAGAAGGTCCTTCAATAA 74133
>seq20728
Length=3653
Score = 102 bits (112), Expect = 1e-18
Identities = 179/251 (71%), Gaps = 15/251 (6%)
Strand=Plus/Plus
Query 1754 GGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA-TTTACAGTTGGATTGCCAGTCCTT 1812
||||| || ||||||||||||| ||| || ||||| ||| || |||| |||| | |
Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCA-TTGGCCTGCCGTTGCG- 1499
Query 1813 CTGGGCCCCCATGAATTCCTTAAAGTGCTTT------AAGTATTGGGGGTTGACGTCATC 1866
||| || || | ||| | | | | |||||| || || | || |||||||||
Sbjct 1500 CTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559
Query 1867 AATGACGTTATACCAAGCACTATTGCTGTATAC-TTTTGGGCTTAAA-TCTA-AATGCCC 1923
||||||||||| || ||| ||| || ||| |||| | ||||| |||| || | |
Sbjct 1560 GATGACGTTATATCATGCATCATT--TGAGTACGTTTTCGAATTAAAATCTATAAATCTC 1617
Query 1924 ACATAAATAGTTATGTGGGCCCAATGACCTGGCCCATACTGTTTTGCCGATTCTGCTTGG 1983
| || ||||| |||||| | ||||| | |||||| ||||||| || ||||| |||
Sbjct 1618 AT-TATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGG 1676
Query 1984 GCCTTCAATAA 1994
|||||||||||
Sbjct 1677 GCCTTCAATAA 1687
>seq77518
Length=14724
Score = 98.7 bits (108), Expect = 2e-17
Identities = 199/288 (69%), Gaps = 17/288 (6%)
Strand=Plus/Minus
Query 1730 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA- 1788
|| |||||||| || | |||| ||||| || |||||||||||||||| || ||||
Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341
Query 1789 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGC--TTTAAG 1846
||| || || || || |||| || || || | ||| | | | | ||| |||||
Sbjct 2340 TTTGCA-TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282
Query 1847 TA------TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATACT 1900
|| ||| || ||| |||||||||||||||||||| || || |||| |
Sbjct 2281 TAAATAAGCTGGAGG--GACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 2224
Query 1901 TTTGGGCTTAAATCTA-AATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCCCA 1959
|| | ||||| | || ||||| || ||| |||||||| ||||| | | |||||
Sbjct 2223 TTCAAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCCA 2165
Query 1960 TACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGG 2007
|||||||| |||||| || || |||||||||| ||| | ||||
Sbjct 2164 AACTGTTTTACCGATT---CTAGGTCCTTCAATAATAATGTTTTTGGG 2120
>seq80468
Length=4946
Score = 96.9 bits (106), Expect = 6e-17
Identities = 191/272 (70%), Gaps = 18/272 (7%)
Strand=Plus/Plus
Query 1734 GATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTAC 1793
||||||| || | |||| | |||||||| |||||||| ||||| || || ||||| ||
Sbjct 4273 GATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTG 4332
Query 1794 AGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT------TAAGT 1847
|||| | ||| | | ||| || || | ||| | | | | ||||| ||| |
Sbjct 4333 TATTGGCCTACCATTG-TGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 4391
Query 1848 A--TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATACTTTTGG 1905
| ||| || |||||| | |||||||||||||| ||| |||| ||| ||||||
Sbjct 4392 AATTTGAAGG--GACGTCGTTGATGACGTTATACCATGCATAATTGA-GTACG-TTTTGG 4447
Query 1906 GCTTAAA--TC-TAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCCCATAC 1962
||||| || ||||| |||| || ||||| |||| ||| ||| | | | |||| |
Sbjct 4448 AATTAAAATTCATAAAT-CCCAT-TATGTAGTTGTGTGAGCCTAATCAACGAGTCCATGC 4505
Query 1963 TGTTTTGCCGATTCTGCTTGGGCCTTCAATAA 1994
|||||| | ||||| ||||||||||||||
Sbjct 4506 TGTTTTCCATATTCTTGATGGGCCTTCAATAA 4537
>seq953
Length=224861
Score = 96.9 bits (106), Expect = 6e-17
Identities = 201/290 (69%), Gaps = 16/290 (6%)
Strand=Plus/Plus
Query 1729 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1788
||| |||||||| | | |||| | ||||| || ||||||||||||| || || |||||
Sbjct 1842 TCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCGTA 1901
Query 1789 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTT---- 1843
||| || ||| ||||| | ||| | || | ||| | | | | | ||||
Sbjct 1902 CTTTGCA-TTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTAA 1960
Query 1844 --AAGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATAC-T 1900
|| || | || |||||| || || ||||||||||| ||| ||| || ||| |
Sbjct 1961 TTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATT--TGAGTACGT 2018
Query 1901 TTTGGGCTTAAA-TC--TAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCC 1957
||| | ||||| || ||||| | || || ||||| |||||||| ||||| | |||
Sbjct 2019 TTTCGAATTAAAATCCATAAAT-CTCAT-TATGTAGTTGTGTGGGCCTAATGAACGAGCC 2076
Query 1958 CATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGG 2007
||| ||||||| || ||||| || ||||||||||| ||| |||||
Sbjct 2077 CATGCTGTTTTCCCTATTCTTGATGTGCCTTCAATAATAATGCTCATGGG 2126
>seq815
Length=151552
Score = 96.9 bits (106), Expect = 6e-17
Identities = 201/290 (69%), Gaps = 16/290 (6%)
Strand=Plus/Minus
Query 1729 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1788
||| |||||||| || | ||| | ||||| || |||||||||||| | || || ||||
Sbjct 85422 TCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCGTA 85363
Query 1789 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT----- 1842
||| || |||| | ||||| ||| || || | ||| | | | | | |||
Sbjct 85362 CTTTGCA-TTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAAA 85304
Query 1843 -TAAGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATAC-T 1900
||| || | | |||||| || |||||||||||||| ||| ||| || ||| |
Sbjct 85303 TTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACGT 85246
Query 1901 TTTGGGCTTAAA-TC--TAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCC 1957
||||| ||||| || ||||| |||| || ||||| |||| ||| ||| | | |||
Sbjct 85245 TTTGGAATTAAAATCCATAAAT-CCCAT-TATGTAGTTGTGTGTGCCTAATAAACGAGCC 85188
Query 1958 CATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGG 2007
||| | |||| || ||||| |||||||||||||| ||| |||||
Sbjct 85187 CATGTTATTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 85138
>seq22495
Length=567
Score = 95.1 bits (104), Expect = 2e-16
Identities = 163/231 (71%), Gaps = 12/231 (5%)
Strand=Plus/Minus
Query 1729 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1788
||| |||||||| || | |||| | |||| || | ||||||||||||||| || |||||
Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309
Query 1789 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1841
||| || |||| ||||||| ||| || || | ||| | | | | ||||
Sbjct 308 CTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250
Query 1842 TTAAGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATAC-T 1900
|||| || | || || |||||| |||||||||||||| ||| ||| || ||| |
Sbjct 249 TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT--TGAGTACGT 192
Query 1901 TTTGGGCTT-AAATCTAAATGCCCACATAAATAGTTATGTGGGCCCAATGA 1950
||||| || ||||| ||| || || ||||| |||||||| |||||
Sbjct 191 TTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141
>seq490
Length=137872
Score = 95.1 bits (104), Expect = 2e-16
Identities = 218/320 (68%), Gaps = 19/320 (6%)
Strand=Plus/Minus
Query 1711 TTTAAATGAGGAGCC----CTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTT 1766
|||| | ||| |||| ||||| | |||||| |||| || | || ||||||||||
Sbjct 70645 TTTATAAGAGTAGCCTGTACTCTCATT-ATTGCATAGGACAATTGATGGTATTCCACCTT 70587
Query 1767 TAATTTGAACTGGCTTCCCGTATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGA 1826
||||||| | |||||| | ||||| | | | ||||||| | || |||||| || |
Sbjct 70586 TAATTTGTATTGGCTTAGCATATTTTGAATCAGCTTGCCAGCTATGCTTGGCCCCAATAA 70527
Query 1827 ATTCCTTAAAGTGCTTTA-------AG-TATTGGGGGTTGACGTCATCAATGACGTTATA 1878
||| | | ||||| || | ||| || ||||||||| |||||||||||
Sbjct 70526 GCTCCCTCCAATGCTTCTTCCAGAGAGATGCTGGAGG--GACGTCATCTATGACGTTATA 70469
Query 1879 CCAAGCACT-ATTGCTGTATACTTTTGGGCTTAAATCTA-AATGCCCACATAAATAGTTA 1936
||| | ||| |||| || ||| | ||||| | || ||||| | || || |||
Sbjct 70468 CCATG-ACTCATTGGAAAATGTCTTTCTATTGAAATCCATAACGCCCATA-AAGTAATTA 70411
Query 1937 TGTGGGCCCAATGACCTGGCCCATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACT 1996
||||| ||||| || |||||| | || || || | ||| ||| ||||| |||| |
Sbjct 70410 TGTGGACCCAAACTTCTAGCCCATTCAGTCTTCCCAAGTCTAGATGGACCTTCTATAATT 70351
Query 1997 ATGGATATGGGTCTATCCGG 2016
| || ||||| ||||| ||
Sbjct 70350 AAAGACATGGGCCTATCTGG 70331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8884093323525
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |