Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_013467.1 Length=2814 Score E Sequences producing significant alignments: (Bits) Value seq3283 145 1e-31 seq3439 138 2e-29 seq54129 120 5e-24 seq5745 109 1e-20 seq1993 104 4e-19 seq20728 102 1e-18 seq77518 98.7 2e-17 seq80468 96.9 6e-17 seq953 96.9 6e-17 seq815 96.9 6e-17 seq22495 95.1 2e-16 seq490 95.1 2e-16 >seq3283 Length=49157 Score = 145 bits (160), Expect = 1e-31 Identities = 212/290 (73%), Gaps = 16/290 (6%) Strand=Plus/Minus Query 1729 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1788 ||| |||||||| || | |||| | ||||| || ||||||||||||||||| |||||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1789 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1841 ||| || |||| ||||| | ||| || || | ||| | | | | |||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1842 TTAAGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATAC-T 1900 |||| || | || |||||| || |||||||||||||| ||| ||| || ||| | Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACGT 2105 Query 1901 TTTGGGCTT-AAATC--TAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCC 1957 ||||| || ||||| ||||| |||| || ||||| |||||||| ||||| | ||| Sbjct 2104 TTTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1958 CATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGG 2007 ||| ||||||| || ||||| |||||||||||||| ||| ||||| Sbjct 2046 CATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1997 >seq3439 Length=62978 Score = 138 bits (152), Expect = 2e-29 Identities = 205/284 (72%), Gaps = 14/284 (5%) Strand=Plus/Minus Query 1734 GATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTAC 1793 ||||||| || | |||| | ||||| || ||||||||||||||||| || ||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1794 AGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT------TAAGT 1847 ||||| ||||| | ||| || || | ||| | | | | ||||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1848 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATAC-TTTTGGG 1906 | | || ||| ||||| |||||||||||||| ||| ||| || ||| |||||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT--TGAGTACGTTTTGGA 779 Query 1907 CTTAAA-TC--TAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCCCATACT 1963 ||||| || ||||| |||| || ||||| |||||||| ||||| | |||||| || Sbjct 778 ATTAAAATCCATAAAT-CCCAT-TATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCT 721 Query 1964 GTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGG 2007 ||||| || ||||| |||||||||||||| ||| ||||| Sbjct 720 GTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 677 >seq54129 Length=2260 Score = 120 bits (132), Expect = 5e-24 Identities = 205/289 (71%), Gaps = 14/289 (5%) Strand=Plus/Minus Query 1729 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1788 ||| |||||||| || | |||| | ||||| || ||||||||||||| ||| || ||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1789 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1841 ||| || |||| || |||| | ||| || || | ||| | | | |||| Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1842 TTAAGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATACTT 1901 |||| || | || ||| || || |||||||||||||| || ||| |||| || Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTAT-GTT 2081 Query 1902 TTGGGCTTAAA--TC-TAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCCC 1958 |||| ||||| || ||||| |||| || ||||| ||| ||| ||||| | |||| Sbjct 2080 TTGGAATTAAAATTCATAAAT-CCCA-TTATGTAGTTGTGTTGGCATAATGAACGAGCCC 2023 Query 1959 ATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGG 2007 || ||||||| || ||||| |||||||||||||| ||| ||||| Sbjct 2022 ATGCTGTTTTTCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1974 >seq5745 Length=45059 Score = 109 bits (120), Expect = 1e-20 Identities = 183/258 (71%), Gaps = 14/258 (5%) Strand=Plus/Plus Query 1730 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA- 1788 || |||||||| | | |||| ||||| |||||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1789 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCT--TAAAGTGCTTTAAG 1846 ||| || || || ||||| | || || || ||||| | | ||| || ||||| Sbjct 43601 TTTGCA-TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1847 TA------TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATACT 1900 || ||| || || ||||||||||||||||||||| || || ||| | Sbjct 43660 TAAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1901 TTTGGGCTTAAATCTA-AATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCCCA 1959 || | | ||||| | || ||||| || ||| |||||||| ||||| || | ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 Query 1960 TACTGTTTTGCCGATTCT 1977 |||||||| |||||||| Sbjct 43777 AACTGTTTTACCGATTCT 43794 >seq1993 Length=81530 Score = 104 bits (114), Expect = 4e-19 Identities = 194/278 (70%), Gaps = 14/278 (5%) Strand=Plus/Minus Query 1727 TCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCG 1786 || || |||||||| || | |||| ||||| || |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1787 TA-TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTT-- 1843 || ||| || ||| | ||||| | || || | | ||| | | | | || ||| Sbjct 74346 TACTTTGCATTTG-ACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1844 ----AAGTAT--TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTAT 1897 || || ||| || |||||||||||||||||||||||| || | || ||| Sbjct 74287 AATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTTGTTCGATTAT 74230 Query 1898 ACTTTTGGGCTTAAATCTA-AATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGC 1956 ||| | | ||||| | || ||||| || ||| |||||||| ||||| || | | Sbjct 74229 GTTTTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGT 74171 Query 1957 CCATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAA 1994 ||| |||||||| |||||||| || |||||||||| Sbjct 74170 CCAAACTGTTTTACCGATTCTAGAAGGTCCTTCAATAA 74133 >seq20728 Length=3653 Score = 102 bits (112), Expect = 1e-18 Identities = 179/251 (71%), Gaps = 15/251 (6%) Strand=Plus/Plus Query 1754 GGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA-TTTACAGTTGGATTGCCAGTCCTT 1812 ||||| || ||||||||||||| ||| || ||||| ||| || |||| |||| | | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCA-TTGGCCTGCCGTTGCG- 1499 Query 1813 CTGGGCCCCCATGAATTCCTTAAAGTGCTTT------AAGTATTGGGGGTTGACGTCATC 1866 ||| || || | ||| | | | | |||||| || || | || ||||||||| Sbjct 1500 CTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1867 AATGACGTTATACCAAGCACTATTGCTGTATAC-TTTTGGGCTTAAA-TCTA-AATGCCC 1923 ||||||||||| || ||| ||| || ||| |||| | ||||| |||| || | | Sbjct 1560 GATGACGTTATATCATGCATCATT--TGAGTACGTTTTCGAATTAAAATCTATAAATCTC 1617 Query 1924 ACATAAATAGTTATGTGGGCCCAATGACCTGGCCCATACTGTTTTGCCGATTCTGCTTGG 1983 | || ||||| |||||| | ||||| | |||||| ||||||| || ||||| ||| Sbjct 1618 AT-TATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGG 1676 Query 1984 GCCTTCAATAA 1994 ||||||||||| Sbjct 1677 GCCTTCAATAA 1687 >seq77518 Length=14724 Score = 98.7 bits (108), Expect = 2e-17 Identities = 199/288 (69%), Gaps = 17/288 (6%) Strand=Plus/Minus Query 1730 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA- 1788 || |||||||| || | |||| ||||| || |||||||||||||||| || |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1789 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGC--TTTAAG 1846 ||| || || || || |||| || || || | ||| | | | | ||| ||||| Sbjct 2340 TTTGCA-TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1847 TA------TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATACT 1900 || ||| || ||| |||||||||||||||||||| || || |||| | Sbjct 2281 TAAATAAGCTGGAGG--GACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 2224 Query 1901 TTTGGGCTTAAATCTA-AATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCCCA 1959 || | ||||| | || ||||| || ||| |||||||| ||||| | | ||||| Sbjct 2223 TTCAAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCCA 2165 Query 1960 TACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGG 2007 |||||||| |||||| || || |||||||||| ||| | |||| Sbjct 2164 AACTGTTTTACCGATT---CTAGGTCCTTCAATAATAATGTTTTTGGG 2120 >seq80468 Length=4946 Score = 96.9 bits (106), Expect = 6e-17 Identities = 191/272 (70%), Gaps = 18/272 (7%) Strand=Plus/Plus Query 1734 GATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTAC 1793 ||||||| || | |||| | |||||||| |||||||| ||||| || || ||||| || Sbjct 4273 GATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTG 4332 Query 1794 AGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT------TAAGT 1847 |||| | ||| | | ||| || || | ||| | | | | ||||| ||| | Sbjct 4333 TATTGGCCTACCATTG-TGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 4391 Query 1848 A--TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATACTTTTGG 1905 | ||| || |||||| | |||||||||||||| ||| |||| ||| |||||| Sbjct 4392 AATTTGAAGG--GACGTCGTTGATGACGTTATACCATGCATAATTGA-GTACG-TTTTGG 4447 Query 1906 GCTTAAA--TC-TAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCCCATAC 1962 ||||| || ||||| |||| || ||||| |||| ||| ||| | | | |||| | Sbjct 4448 AATTAAAATTCATAAAT-CCCAT-TATGTAGTTGTGTGAGCCTAATCAACGAGTCCATGC 4505 Query 1963 TGTTTTGCCGATTCTGCTTGGGCCTTCAATAA 1994 |||||| | ||||| |||||||||||||| Sbjct 4506 TGTTTTCCATATTCTTGATGGGCCTTCAATAA 4537 >seq953 Length=224861 Score = 96.9 bits (106), Expect = 6e-17 Identities = 201/290 (69%), Gaps = 16/290 (6%) Strand=Plus/Plus Query 1729 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1788 ||| |||||||| | | |||| | ||||| || ||||||||||||| || || ||||| Sbjct 1842 TCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCGTA 1901 Query 1789 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTT---- 1843 ||| || ||| ||||| | ||| | || | ||| | | | | | |||| Sbjct 1902 CTTTGCA-TTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTAA 1960 Query 1844 --AAGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATAC-T 1900 || || | || |||||| || || ||||||||||| ||| ||| || ||| | Sbjct 1961 TTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATT--TGAGTACGT 2018 Query 1901 TTTGGGCTTAAA-TC--TAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCC 1957 ||| | ||||| || ||||| | || || ||||| |||||||| ||||| | ||| Sbjct 2019 TTTCGAATTAAAATCCATAAAT-CTCAT-TATGTAGTTGTGTGGGCCTAATGAACGAGCC 2076 Query 1958 CATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGG 2007 ||| ||||||| || ||||| || ||||||||||| ||| ||||| Sbjct 2077 CATGCTGTTTTCCCTATTCTTGATGTGCCTTCAATAATAATGCTCATGGG 2126 >seq815 Length=151552 Score = 96.9 bits (106), Expect = 6e-17 Identities = 201/290 (69%), Gaps = 16/290 (6%) Strand=Plus/Minus Query 1729 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1788 ||| |||||||| || | ||| | ||||| || |||||||||||| | || || |||| Sbjct 85422 TCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCGTA 85363 Query 1789 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT----- 1842 ||| || |||| | ||||| ||| || || | ||| | | | | | ||| Sbjct 85362 CTTTGCA-TTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAAA 85304 Query 1843 -TAAGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATAC-T 1900 ||| || | | |||||| || |||||||||||||| ||| ||| || ||| | Sbjct 85303 TTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACGT 85246 Query 1901 TTTGGGCTTAAA-TC--TAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCC 1957 ||||| ||||| || ||||| |||| || ||||| |||| ||| ||| | | ||| Sbjct 85245 TTTGGAATTAAAATCCATAAAT-CCCAT-TATGTAGTTGTGTGTGCCTAATAAACGAGCC 85188 Query 1958 CATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGG 2007 ||| | |||| || ||||| |||||||||||||| ||| ||||| Sbjct 85187 CATGTTATTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 85138 >seq22495 Length=567 Score = 95.1 bits (104), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 12/231 (5%) Strand=Plus/Minus Query 1729 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1788 ||| |||||||| || | |||| | |||| || | ||||||||||||||| || ||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1789 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1841 ||| || |||| ||||||| ||| || || | ||| | | | | |||| Sbjct 308 CTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1842 TTAAGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATAC-T 1900 |||| || | || || |||||| |||||||||||||| ||| ||| || ||| | Sbjct 249 TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT--TGAGTACGT 192 Query 1901 TTTGGGCTT-AAATCTAAATGCCCACATAAATAGTTATGTGGGCCCAATGA 1950 ||||| || ||||| ||| || || ||||| |||||||| ||||| Sbjct 191 TTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq490 Length=137872 Score = 95.1 bits (104), Expect = 2e-16 Identities = 218/320 (68%), Gaps = 19/320 (6%) Strand=Plus/Minus Query 1711 TTTAAATGAGGAGCC----CTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTT 1766 |||| | ||| |||| ||||| | |||||| |||| || | || |||||||||| Sbjct 70645 TTTATAAGAGTAGCCTGTACTCTCATT-ATTGCATAGGACAATTGATGGTATTCCACCTT 70587 Query 1767 TAATTTGAACTGGCTTCCCGTATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGA 1826 ||||||| | |||||| | ||||| | | | ||||||| | || |||||| || | Sbjct 70586 TAATTTGTATTGGCTTAGCATATTTTGAATCAGCTTGCCAGCTATGCTTGGCCCCAATAA 70527 Query 1827 ATTCCTTAAAGTGCTTTA-------AG-TATTGGGGGTTGACGTCATCAATGACGTTATA 1878 ||| | | ||||| || | ||| || ||||||||| ||||||||||| Sbjct 70526 GCTCCCTCCAATGCTTCTTCCAGAGAGATGCTGGAGG--GACGTCATCTATGACGTTATA 70469 Query 1879 CCAAGCACT-ATTGCTGTATACTTTTGGGCTTAAATCTA-AATGCCCACATAAATAGTTA 1936 ||| | ||| |||| || ||| | ||||| | || ||||| | || || ||| Sbjct 70468 CCATG-ACTCATTGGAAAATGTCTTTCTATTGAAATCCATAACGCCCATA-AAGTAATTA 70411 Query 1937 TGTGGGCCCAATGACCTGGCCCATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACT 1996 ||||| ||||| || |||||| | || || || | ||| ||| ||||| |||| | Sbjct 70410 TGTGGACCCAAACTTCTAGCCCATTCAGTCTTCCCAAGTCTAGATGGACCTTCTATAATT 70351 Query 1997 ATGGATATGGGTCTATCCGG 2016 | || ||||| ||||| || Sbjct 70350 AAAGACATGGGCCTATCTGG 70331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8884093323525