Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_013639.1 Length=2808 Score E Sequences producing significant alignments: (Bits) Value seq3283 122 2e-24 seq3439 120 5e-24 seq953 100 5e-18 seq5745 98.7 2e-17 seq54129 95.1 2e-16 seq22495 95.1 2e-16 seq33 91.5 3e-15 seq490 84.2 4e-13 seq20728 80.6 5e-12 seq80468 78.8 2e-11 seq815 78.8 2e-11 >seq3283 Length=49157 Score = 122 bits (134), Expect = 2e-24 Identities = 182/254 (72%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 1728 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1787 ||||| |||||||| || | |||| | ||||| || ||||||||||||| || |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1788 TACTTGGTGTTGCTTTGCCAGTCTCGCTGGGCCCCCATAAATTCCTTAAAGTGTT----- 1842 ||||| | ||| ||||| | |||||| || || | || | | | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1843 -TTAGATAATGGGGATCGACGTCATCAATGACGTTATACCAAGCGTTATTAGAATAAACC 1901 ||| ||||| ||| |||||| || |||||||||||||| || | ||| || | | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGT-ACGT 2105 Query 1902 TTTGGACTT-AAGTC--TAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCC 1958 |||||| || || || ||||| || || ||| || ||||| |||||||| | |||| Sbjct 2104 TTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1959 CAAACTGTTTTGCC 1972 || ||||||| || Sbjct 2046 CATGCTGTTTTCCC 2033 >seq3439 Length=62978 Score = 120 bits (132), Expect = 5e-24 Identities = 190/268 (71%), Gaps = 12/268 (4%) Strand=Plus/Minus Query 1714 TATATGATGATGTCGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTT 1773 |||| ||| || ||||| ||||||| || | |||| | ||||| || |||||||||| Sbjct 977 TATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTT 918 Query 1774 GAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCGCTGGGCCCCCATAAATTCCT 1833 ||| || || |||||||| | |||| ||||| | |||||| || || | || | | Sbjct 917 GAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTT 858 Query 1834 TAAAGTGTT------TTAGATAATGGGGATCGACGTCATCAATGACGTTATACCAAGCGT 1887 | | || | ||| ||||| ||| ||| ||||| |||||||||||||| || | Sbjct 857 GATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCAT 798 Query 1888 TATTAGAATAAACCTTTGGACTT-AAGTC--TAAATGACCACATAAGTAATTATGTGGCC 1944 ||| || | | |||||| || || || ||||| || || ||| || ||||| | Sbjct 797 CATTTGAGT-ACGTTTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGC 741 Query 1945 CTAATGACCTAGCCCAAACTGTTTTGCC 1972 ||||||| | |||||| ||||||| || Sbjct 740 CTAATGAACGAGCCCATGCTGTTTTCCC 713 >seq953 Length=224861 Score = 100 bits (110), Expect = 5e-18 Identities = 177/254 (70%), Gaps = 12/254 (5%) Strand=Plus/Plus Query 1728 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1787 ||||| |||||||| | | |||| | ||||| || |||||||||||||| | || ||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1788 TACTTGGTGTTGCTTTGCCAGTCTCGCTGGGCCCCCATAAA---TTCCTTAAAGTGTT-- 1842 ||||| | ||| ||||| | |||||| | || | || || | | | | || Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1843 -TTAGATAATGGGGATCGACGTCATCAATGACGTTATACCAAGCGTTATTAGAATAAACC 1901 ||| ||||| ||| |||||| || || ||||||||||| || | ||| || || Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTT 2019 Query 1902 TTTGGACTTAAGTC--TAAATGACCACA-TAAGTAATTATGTGGCCCTAATGACCTAGCC 1958 || | | | || || ||||| | || || ||| || ||||| |||||||| | |||| Sbjct 2020 TTCGAATTAAAATCCATAAAT---CTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2076 Query 1959 CAAACTGTTTTGCC 1972 || ||||||| || Sbjct 2077 CATGCTGTTTTCCC 2090 >seq5745 Length=45059 Score = 98.7 bits (108), Expect = 2e-17 Identities = 173/250 (69%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 1731 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTAC 1790 || |||||||| | | |||| ||||| |||||||||||||||| || || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1791 TTGGTGTTGCTTTGCCAGTCTCGCTGGGCCCCCATAAATTCCTTAAAGTGTT------TT 1844 || | || ||||| | | || || || || || | | | | |||| || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1845 AGATAATGGGGATCGACGTCATCAATGACGTTATACCAAGCGTTATTAGAATAAACCTTT 1904 | |||| ||| || ||||||||||||||||||||| |||| || || || || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1905 GGACTTAAGTCTA-AATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAAC 1963 | | | || || | || | ||| || ||||||||||| || || || | |||||||| Sbjct 43721 GAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCAAAC 43779 Query 1964 TGTTTTGCCG 1973 |||||| ||| Sbjct 43780 TGTTTTACCG 43789 >seq54129 Length=2260 Score = 95.1 bits (104), Expect = 2e-16 Identities = 178/254 (70%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 1728 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1787 ||||| |||||||| || | |||| | ||||| || |||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1788 TACTTGGTGTTGCTTTGCCAGTCTCGCTGGGCCCCCATAAATTCCT--TAAAG--TGTT- 1842 ||||| | ||| || |||| |||| || || | || | | ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1843 -TTAGATAATGGGGATCGACGTCATCAATGACGTTATACCAAGCGTTATTAGAATAAACC 1901 ||| ||||| ||| ||| || || |||||||||||||| | | ||| || | | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGT-ATGT 2082 Query 1902 TTTGGACTT--AAGTC-TAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCC 1958 |||||| || || || ||||| || || ||| || ||| | | |||||| | |||| Sbjct 2081 TTTGGAATTAAAATTCATAAAT--CCCATTATGTAGTTGTGTTGGCATAATGAACGAGCC 2024 Query 1959 CAAACTGTTTTGCC 1972 || ||||||| || Sbjct 2023 CATGCTGTTTTTCC 2010 >seq22495 Length=567 Score = 95.1 bits (104), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 1728 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1787 ||||| |||||||| || | |||| | |||| || | ||||||||||| || || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1788 TACTTGGTGTTGCTTTGCCAGTCTCGCTGGGCCCCCATAAATTCCTTAAAGTGTT----- 1842 ||||| | ||| ||||||| ||||| || || | || | | | | || | Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1843 -TTAGATAATGGGGATCGACGTCATCAATGACGTTATACCAAGCGTTATTAGAATAAACC 1901 ||| ||||| ||| || |||||| |||||||||||||| || | ||| || | | Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGT-ACGT 192 Query 1902 TTTGGACTT-AAGTCTAAATGACCACATAAGTAATTATGTGGCCCTAATGA 1951 |||||| || || || ||| || || ||| || ||||| |||||||| Sbjct 191 TTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq33 Length=454124 Score = 91.5 bits (100), Expect = 3e-15 Identities = 169/246 (69%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 1731 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTAC 1790 || |||||||| || | |||| ||||| || | ||||||||||| || || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1791 TTGGTGTTGCTTTGCCAGTCTCGCTGGGCCCCCATAAATTCCTTAAAGTGTTTT------ 1844 || | || ||||||| | ||| | || | || | | | | || ||| Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1845 AGATAATGGGGATCGACGTCATCAATGACGTTATACCAAGCGTTATTAGAATAAACCTTT 1904 | |||| ||| |||||||||||||||||||||||| |||| || || || | Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1905 GGACTTAAGTCTA-AATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAAC 1963 | | | || || | || | ||| || |||||||||||| || || || | |||||||| Sbjct 403122 GAATTCAAATCCATAAAGCCCA-TTATGTAATTATGTGGACCCAACGAACGTGCCCAAAC 403064 Query 1964 TGTTTT 1969 |||||| Sbjct 403063 TGTTTT 403058 >seq490 Length=137872 Score = 84.2 bits (92), Expect = 4e-13 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 1736 ATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGT 1795 |||||| |||| || | || ||||||||||||||||| || ||||| | || || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1796 GTTGCTTTGCCAGTCTCGCTGGGCCCCCATAAATTCCTT--AAAG--TGTTTTAGATA-A 1850 | ||||||| ||| |||||| |||| ||| | || | | || ||| | | Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1851 TG-GGGATCGACGTCATCAATGACGTTATACCAAGCGTTATTAGAATAAACCTTTGGACT 1909 || ||| ||||||||| |||||||||||||| | | ||| ||| | |||| | | Sbjct 70498 TGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCTATT 70439 Query 1910 TAAGTCTA-AATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCA 1960 || || | || | ||| | |||||||||||||| || || |||||||| Sbjct 70438 GAAATCCATAACGCCCATA-AAGTAATTATGTGGACCCAAACTTCTAGCCCA 70388 >seq20728 Length=3653 Score = 80.6 bits (88), Expect = 5e-12 Identities = 155/225 (69%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 1755 GGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCGC 1814 ||||| || ||||||||||||| || || |||||||| | ||| |||| || ||| Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1815 TGGGCCCCCATAAATTCCTTAAAGTGTTTT------AGATAATGGGGATCGACGTCATCA 1868 || || || | || | | | | || ||| | ||||| ||| ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1869 ATGACGTTATACCAAGCGTTATTAGAATAAACCTTTGGACTTAAGTCTAAATGACCACA- 1927 ||||||||||| || || | ||| || || || | | | || |||| | | | || Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATA-AATCTCAT 1619 Query 1928 TAAGTAATTATGTGGCCCTAATGACCTAGCCCAAACTGTTTTGCC 1972 || ||| || ||||| ||||||| | |||||| ||||||| || Sbjct 1620 TATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCC 1664 >seq80468 Length=4946 Score = 78.8 bits (86), Expect = 2e-11 Identities = 172/251 (69%), Gaps = 14/251 (6%) Strand=Plus/Plus Query 1728 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1787 ||||| ||||||| || | |||| | |||||||| |||||||| |||| || || ||| Sbjct 4266 GGTCCAAGATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTGAACAGGTTTTCCG 4325 Query 1788 TACTTGGTGTTGCTTTGCCAGTCTCGCTGGGCCCCCATAAATTCCTTAAAGTGTTT---- 1843 ||||| || ||| | ||| | | |||| || || | || | | | | || || Sbjct 4326 TACTTTGTATTGGCCTACCATTGT-GCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 4384 Query 1844 --TAGATAATGGGGATCGACGTCATCAATGACGTTATACCAAGCGTTATTAGAATAAACC 1901 || ||||| | | |||||| | |||||||||||||| || | ||| || | | Sbjct 4385 ATTAAATAATTTGAAGGGACGTCGTTGATGACGTTATACCATGCATAATT-GAGT-ACGT 4442 Query 1902 TTTGGACTT--AAGTC-TAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCC 1958 |||||| || || || ||||| || || ||| || |||| |||||| | | || | Sbjct 4443 TTTGGAATTAAAATTCATAAAT--CCCATTATGTAGTTGTGTGAGCCTAATCAACGAGTC 4500 Query 1959 CAAACTGTTTT 1969 || ||||||| Sbjct 4501 CATGCTGTTTT 4511 >seq815 Length=151552 Score = 78.8 bits (86), Expect = 2e-11 Identities = 165/242 (68%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 1728 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1787 ||||| |||||||| || | ||| | ||||| || |||||||||||| ||| || || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1788 TACTTGGTGTTGCTTTGCCAGTCTCGCTGGGCCCCCATAAATTCCTTAAAGTGTT----- 1842 ||||| | ||| | ||||| ||||| || || | || | | | | | | Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1843 -TTAGATAATGGGGATCGACGTCATCAATGACGTTATACCAAGCGTTATTAGAATAAACC 1901 ||| ||||| || |||||| || |||||||||||||| || | ||| || | | Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGT-ACGT 85246 Query 1902 TTTGGACTT-AAGTC--TAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCC 1958 |||||| || || || ||||| || || ||| || |||| |||||| | | |||| Sbjct 85245 TTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCC 85188 Query 1959 CA 1960 || Sbjct 85187 CA 85186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8864912121675