Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_013640.2 Length=2823 Score E Sequences producing significant alignments: (Bits) Value seq3439 134 2e-28 seq3283 132 9e-28 seq54129 120 5e-24 seq20728 95.1 2e-16 seq490 91.5 3e-15 seq5745 89.7 9e-15 seq22495 82.4 1e-12 seq35612 78.8 2e-11 >seq3439 Length=62978 Score = 134 bits (148), Expect = 2e-28 Identities = 203/283 (72%), Gaps = 12/283 (4%) Strand=Plus/Minus Query 1769 GATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTAC 1828 ||||||| || | |||| | ||||| |||||||||||||||||||| |||||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1829 AGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------TTAGGT 1882 ||||| ||||| | ||| || || | ||| | | | | |||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1883 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAAACTTTTGGGC 1942 | | || ||| ||||| |||||||||||||| ||| || || | |||||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGT-ACGTTTTGGAA 778 Query 1943 TT-AAATC--TAAATGCCCACACAAGTAATTGTGAGGGCCCAAAGACCTGGCCCATACTG 1999 || ||||| ||||| |||| | ||| ||||| ||||| || || | |||||| ||| Sbjct 777 TTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTG 720 Query 2000 TTTTTCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGG 2042 |||| |||||||| |||||||||||||| |||| ||||| Sbjct 719 TTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 677 >seq3283 Length=49157 Score = 132 bits (146), Expect = 9e-28 Identities = 208/289 (72%), Gaps = 14/289 (5%) Strand=Plus/Minus Query 1764 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1823 ||| |||||||| || | |||| | ||||| |||||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1824 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT----- 1877 ||| || |||| ||||| | ||| || || | ||| | | | | ||||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1878 -TAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAAACTT 1936 || || | || |||||| || |||||||||||||| ||| || ||| || Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACG-TT 2104 Query 1937 TTGGGCTTAAA-TC--TAAATGCCCACACAAGTAATTGTGAGGGCCCAAAGACCTGGCCC 1993 |||| ||||| || ||||| |||| | ||| ||||| ||||| || || | |||| Sbjct 2103 TTGGAATTAAAATCCATAAAT-CCCATT-ATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1994 ATACTGTTTTTCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGG 2042 || ||||||| |||||||| |||||||||||||| |||| ||||| Sbjct 2045 ATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1997 >seq54129 Length=2260 Score = 120 bits (132), Expect = 5e-24 Identities = 205/289 (71%), Gaps = 14/289 (5%) Strand=Plus/Minus Query 1764 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1823 ||| |||||||| || | |||| | ||||| |||||||||||||||| ||| |||||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1824 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1876 ||| || |||| || |||| | ||| || || | ||| | | | |||| Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1877 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAAACTT 1936 ||| || | || ||| || || |||||||||||||| || || || | || Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGT-ATGTT 2081 Query 1937 TTGGGCTTAAA--TC-TAAATGCCCACACAAGTAATTGTGAGGGCCCAAAGACCTGGCCC 1993 |||| ||||| || ||||| |||| | ||| ||||| ||| || || | |||| Sbjct 2080 TTGGAATTAAAATTCATAAAT-CCCA-TTATGTAGTTGTGTTGGCATAATGAACGAGCCC 2023 Query 1994 ATACTGTTTTTCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGG 2042 || |||||||||||||||| |||||||||||||| |||| ||||| Sbjct 2022 ATGCTGTTTTTCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1974 >seq20728 Length=3653 Score = 95.1 bits (104), Expect = 2e-16 Identities = 177/254 (70%), Gaps = 11/254 (4%) Strand=Plus/Plus Query 1789 GGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA-TTTACAGTTGGATTGCCAGTCCTT 1847 ||||| || ||||||||||||| ||| |||||||| ||| || |||| |||| | | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCA-TTGGCCTGCCGTTGCG- 1499 Query 1848 CTGGGCCCCCATGAATTCCTTAAAGTGCTTT------AGGTATTGGGGGTTGACGTCATC 1901 ||| || || | ||| | | | | |||||| | || | || ||||||||| Sbjct 1500 CTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1902 AATGACGTTATACCAAGCACTGTTGCTGTAAACTTTTGGGCTTAAATCTA-AATGCCCAC 1960 ||||||||||| || ||| || ||| ||| | | ||||||| || | || Sbjct 1560 GATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATAAATCTCAT 1619 Query 1961 ACAAGTAATTGTGAGGGCCCAAAGACCTGGCCCATACTGTTTTTCCTATTCTGCTTGGGC 2020 | ||| ||||| ||| | || || | |||||| ||||||| |||||||| ||||| Sbjct 1620 T-ATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGC 1678 Query 2021 CTTCAATAACAATG 2034 ||||||||| |||| Sbjct 1679 CTTCAATAATAATG 1692 >seq490 Length=137872 Score = 91.5 bits (100), Expect = 3e-15 Identities = 200/294 (68%), Gaps = 18/294 (6%) Strand=Plus/Minus Query 1770 ATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTACA 1829 |||||| |||| || | || ||||| ||||||||||| | |||||| | ||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1830 GTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT--------TAGG 1881 | | ||||||| | || |||||| || | ||| | | ||||| || Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1882 TATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAAACT---TTT 1938 | ||| || ||||||||| |||||||||||||| | ||| | || ||| | ||| Sbjct 70498 TGCTGGAGG--GACGTCATCTATGACGTTATACCATG-ACTCAT--TGGAAAATGTCTTT 70444 Query 1939 GGGCTTAAATCTA-AATGCCCACACAAGTAATTGTGAGGGCCCAAAGACCTGGCCCATAC 1997 | ||||| | || ||||| | |||||||| || || |||||| || |||||| | Sbjct 70443 CTATTGAAATCCATAACGCCCATA-AAGTAATTATGTGGACCCAAACTTCTAGCCCATTC 70385 Query 1998 TGTTTTTCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGGTCTATCCGG 2051 || || || | ||| ||| ||||| |||| | || ||||| ||||| || Sbjct 70384 AGTCTTCCCAAGTCTAGATGGACCTTCTATAATTAAAGACATGGGCCTATCTGG 70331 >seq5745 Length=45059 Score = 89.7 bits (98), Expect = 9e-15 Identities = 194/281 (69%), Gaps = 16/281 (6%) Strand=Plus/Plus Query 1765 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA- 1823 || |||||||| | | |||| ||||| || ||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1824 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCT--TAAAGTGCTTTAGG 1881 ||| || || || ||||| | || || || ||||| | | ||| || |||| Sbjct 43601 TTTGCA-TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1882 TA------TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAAACT 1935 || ||| || || ||||||||||||||||||||| || ||| | | | | Sbjct 43660 TAAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTT-CGATTATGT 43716 Query 1936 TTTGGGCTT-AAATCTA-AATGCCCACACAAGTAATTGTGAGGGCCCAAAGACCTGGCCC 1993 ||| | || ||||| | || ||||| | ||||| || || ||||| || | |||| Sbjct 43717 TTTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCC 43775 Query 1994 ATACTGTTTTTCCTATTCTGCTTGGGCCTTCAATAACAATG 2034 | |||||||| || ||||| || | | |||||| |||| Sbjct 43776 AAACTGTTTTACCGATTCTAGAAGGTCTTGCAATAATAATG 43816 >seq22495 Length=567 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 1764 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1823 ||| |||||||| || | |||| | |||| |||| ||||||||||||||| |||||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1824 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1876 ||| || |||| ||||||| ||| || || | ||| | | | | |||| Sbjct 308 CTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1877 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCA 1920 ||| || | || || |||||| |||||||||||||| ||| Sbjct 249 TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCA 206 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 1764 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1823 ||| |||||||| || | |||| | ||||| |||||||||||||||||||| |||||||| Sbjct 1509 TCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTA 1568 Query 1824 TTTACAGTTGGATTGCCA 1841 || ||||| ||||| Sbjct 1569 CTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8912865126300