Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014066.1 Length=2612 Score E Sequences producing significant alignments: (Bits) Value seq5745 113 7e-22 seq1993 109 9e-21 seq33 107 3e-20 seq4295 102 1e-18 seq3283 100 5e-18 seq77518 86.0 1e-13 seq1010 86.0 1e-13 seq54129 82.4 1e-12 seq5493 82.4 1e-12 seq6801 80.6 4e-12 seq3439 80.6 4e-12 seq22495 77.0 5e-11 >seq5745 Length=45059 Score = 113 bits (124), Expect = 7e-22 Identities = 182/259 (70%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 1552 CCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA- 1610 || |||||||||| |||||| |||| || || ||||||||||||||||| |||||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1611 TTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTGCTTTAGCTT 1670 ||||| |||||||||||||| ||| || || || || | || | || ||| | Sbjct 43601 TTTGC-ATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1671 TAGATAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATAGACTCG 1730 || ||| || | || ||| ||||||||||||||| | ||||| || || | Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTT 43719 Query 1731 TGGGTTGAAGTCCAGGTGTCCACTGAGGTAGTTATGTGGGCCTAGCGCACGTGCCCACAT 1790 | || || |||| || | | || |||||||| || | || ||||||||| | Sbjct 43720 CGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAAC 43779 Query 1791 TGTCTTTCCGGTCCTCGAA 1809 ||| || ||| | || ||| Sbjct 43780 TGTTTTACCGATTCTAGAA 43798 >seq1993 Length=81530 Score = 109 bits (120), Expect = 9e-21 Identities = 189/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 1549 TCACCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCG 1608 || || ||||||||||||||||| |||| || || |||||||||||||||| |||||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1609 TA-TTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTGCTTTAG 1667 || |||||| ||||||||||||| ||| || | | || | || | || ||| Sbjct 74346 TACTTTGCA-TTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1668 CTTTAGATAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATAGAC 1727 ||| ||| || | |||||| ||||||||||||||| | | | ||| || || Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGT 74228 Query 1728 TCGTGGGTTGAAGTCCAGGTGTCCACTGAGGTAGTTATGTGGGCCTAGCGCACGTGCCCA 1787 | | || || |||| || | | || |||||||| || | || ||||| ||| Sbjct 74227 TTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCA 74168 Query 1788 CATTGTCTTTCCGGTCCTCGAATCACCTTCAA 1819 | ||| || ||| | || ||| ||||||| Sbjct 74167 AACTGTTTTACCGATTCTAGAAGGTCCTTCAA 74136 >seq33 Length=454124 Score = 107 bits (118), Expect = 3e-20 Identities = 174/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 1552 CCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA- 1610 || ||||||||||||||||| |||| || || | ||||||||||||||| || ||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1611 TTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTGCTTTAGCTT 1670 |||||| ||||||||||| | || | || | || | || | || ||| | Sbjct 403242 TTTGCA-TTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1671 TAGATAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATAGACTCG 1730 || ||| || | |||||| ||||||||||||||| | | ||||| || || || Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1731 TGGGTTGAAGTCCAGGTGTCCACTGAGGTAGTTATGTGGGCCTAGCGCACGTGCCCACAT 1790 | || || |||| || | | ||| |||||||| || | || ||||||||| | Sbjct 403123 CGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAAC 403064 Query 1791 TGTCTTTC 1798 ||| |||| Sbjct 403063 TGTTTTTC 403056 >seq4295 Length=67413 Score = 102 bits (112), Expect = 1e-18 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1554 TGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTATTT 1613 ||||||| | ||||||||| ||||||| || |||||||||||| |||| || ||||| || Sbjct 46844 TGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTT 46785 Query 1614 GCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTGCTTTAGCTTTAG 1673 | |||||| | ||||| | |||||| | || | ||||| || | ||| || | Sbjct 46784 GGCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAA 46725 Query 1674 ATAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATAGACTCGTGG 1733 |||| | | ||||| || || ||||| ||| | | || ||| | | | Sbjct 46724 ATAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGA 46665 Query 1734 GTTGAAGTCCAGGTGTCCACTGAGGTAGTTATGTGGGCCTAGCGCACGTGCCCACATTGT 1793 || || |||| | || | | |||||||||||||| || | |||||||| ||||| Sbjct 46664 ATTAAAATCCATGAAGCCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGT 46605 Query 1794 CTTT 1797 |||| Sbjct 46604 CTTT 46601 >seq3283 Length=49157 Score = 100 bits (110), Expect = 5e-18 Identities = 166/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1552 CCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA- 1610 || ||||||||||| ||||| ||| || || ||||||||||||||||| || ||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1611 TTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTGCTTTAGCTT 1670 ||||| ||| | |||||||| || || || | || | || | ||||| | Sbjct 2220 TTTGC-ATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1671 TAGATAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATAGACTCG 1730 || ||| | ||| | ||||||||| |||||||||||| | || ||||| || | Sbjct 2161 TAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 2102 Query 1731 TGGGTTGAAGTCCAGGTGTCCACTGAGGTAGTTATGTGGGCCTAGCGCACGTGCCCA 1787 | || || |||| ||| | | |||||| |||||||||| | ||| ||||| Sbjct 2101 GGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq77518 Length=14724 Score = 86.0 bits (94), Expect = 1e-13 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 1552 CCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA- 1610 || ||||||||||| ||||| |||| || || |||||||||||||||| || |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1611 TTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTGCTTTAGCTT 1670 |||||| |||||||| || | ||| || || | || | || | |||||| | Sbjct 2340 TTTGCA-TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1671 TAGATAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATA 1724 || ||| || | ||| || ||||||||||||||| | | ||||| || || Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTA 2228 >seq1010 Length=204159 Score = 86.0 bits (94), Expect = 1e-13 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1552 CCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTAT 1611 ||||||||||| |||||||| ||||||| | |||||||||||||| | || ||||| Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTAC 36543 Query 1612 TTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCA 1658 ||| || ||| ||||||| | | ||||| |||| |||||||| Sbjct 36544 TTGACATGTGATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCA 36590 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 1552 CCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA- 1610 || ||||||||||| ||||| ||| || || ||||||||||||| ||| || ||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1611 TTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTGCTTTAGCTT 1670 ||||| ||| | ||| || | | || || || | || | || | ||||| | Sbjct 2197 TTTGC-ATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAAT 2139 Query 1671 TAGATAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATA 1724 || ||| | ||| | ||| ||||| |||||||||||| || || ||||| || Sbjct 2138 TAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 >seq5493 Length=32325 Score = 82.4 bits (90), Expect = 1e-12 Identities = 113/155 (73%), Gaps = 5/155 (3%) Strand=Plus/Minus Query 1554 TGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTATTT 1613 ||||||||| | ||| || ||| ||| || | ||||||||||||||| || ||||| || Sbjct 31560 TGGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTT 31501 Query 1614 GCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAG-TGCTTTAGCTTTA 1672 |||||| ||||| | | ||| | || | | ||||||||| | |||| || | Sbjct 31500 CACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAGCTTCTTT-GC---A 31445 Query 1673 GATAGTGCGGTGCGACGTCGTCAATGACGTTATAC 1707 |||| ||||| ||||| ||||||| ||| ||| Sbjct 31444 GATATGTCGGTGATACGTCATCAATGATGTTGTAC 31410 >seq6801 Length=49729 Score = 80.6 bits (88), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 2/73 (3%) Strand=Plus/Plus Query 1555 GGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA-TTT 1613 ||| ||||||| ||||| |||| || || ||||||||||||||||| |||||||| ||| Sbjct 47097 GGAGTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTT 47156 Query 1614 GCAATTTGACTGC 1626 || |||||||||| Sbjct 47157 GC-ATTTGACTGC 47168 >seq3439 Length=62978 Score = 80.6 bits (88), Expect = 4e-12 Identities = 159/233 (68%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 1556 GATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA-TTTG 1614 |||||||||| ||||| ||| || || ||||||||||||||||| || ||||| |||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1615 CAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTGCTTTAGCTTTAGA 1674 | || | ||||||| || || || | || | || | ||||| ||| | Sbjct 896 C-GTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAA 838 Query 1675 TAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATAGACTCGTGGG 1734 || | ||| | ||| || || |||||||||||| | || ||||| || | | Sbjct 837 TAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAA 778 Query 1735 TTGAAGTCCAGGTGTCCACTGAGGTAGTTATGTGGGCCTAGCGCACGTGCCCA 1787 || || |||| ||| | | |||||| |||||||||| | ||| ||||| Sbjct 777 TTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq22495 Length=567 Score = 77.0 bits (84), Expect = 5e-11 Identities = 153/224 (68%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 1552 CCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA- 1610 || ||||||||||| ||||| | | || || | ||||||||||||||| || ||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1611 TTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTGCTTTAGCTT 1670 ||||| ||| | |||||| | || || || | || | || || ||||| | Sbjct 307 TTTGC-ATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1671 TAGATAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATAGACTCG 1730 || ||| | ||| | || ||| || |||||||||||| | || ||||| || | Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 189 Query 1731 TGGGTTGAAGTCCAGGTGTCCACTGAGGTAGTTATGTGGGCCTA 1774 | || || |||| ||| | | |||||| |||||||||| Sbjct 188 GGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTA 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8241753831220