Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014138.1 Length=2653 Score E Sequences producing significant alignments: (Bits) Value seq3283 120 5e-24 seq3439 111 3e-21 seq5745 104 4e-19 seq22495 95.1 2e-16 seq54129 93.3 7e-16 seq1993 91.5 2e-15 seq33 89.7 9e-15 seq35612 86.0 1e-13 seq4295 84.2 4e-13 seq4104 82.4 1e-12 seq1010 82.4 1e-12 seq6801 80.6 4e-12 >seq3283 Length=49157 Score = 120 bits (132), Expect = 5e-24 Identities = 234/344 (68%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 1482 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTGTGTATTGTCCAGGCTTTTAGTGA 1541 |||| |||||| || || |||| ||||| ||||| |||| ||||| | ||| | Sbjct 2386 ATAGTGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 2327 Query 1542 TGAGTTTTCCTGCTTGTCCAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAG 1601 ||| || || | |||| ||| ||||||| | |||||||||||| || Sbjct 2326 TGAATTGGACTCCAAATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAG 2267 Query 1602 CACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAATTGGACTG 1661 ||||| ||| || || |||||||||||||| || || |||||||| ||||| ||| Sbjct 2266 TACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTG 2207 Query 1662 CCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTATTGCGGGCT 1721 ||||| | || || || | || | | | ||||| ||| || | ||| Sbjct 2206 CCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGG 2147 Query 1722 GACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACCCGGGAATTGAAATC--T 1779 ||| || ||||||||||||||| | | ||||||||| |||||| ||||| | Sbjct 2146 GACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCAT 2087 Query 1780 AAATGGCCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCA 1823 |||| || | | ||| || ||||||||||| | ||||||||| Sbjct 2086 AAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq3439 Length=62978 Score = 111 bits (122), Expect = 3e-21 Identities = 233/344 (68%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 1482 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTGTGTATTGTCCAGGCTTTTAGTGA 1541 ||||||||||| || || |||| |||| ||||| |||| ||||| | ||| | Sbjct 1066 ATAGAGGGGGGTGTCGACGAAGTGAAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 1007 Query 1542 TGAGTTTTCCTGCTTGTCCAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAG 1601 ||| || || | || | ||| ||||||| | |||| ||||||| || Sbjct 1006 TGAATTGGACTCCAAATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAG 947 Query 1602 CACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAATTGGACTG 1661 ||||| ||| || || |||||||||||||| || || |||||||| |||| || Sbjct 946 TACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATG 887 Query 1662 CCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTATTGCGGGCT 1721 ||||| | || || || | || | | | ||||| ||| || | ||| Sbjct 886 CCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGG 827 Query 1722 GACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACCCGGGAATTGAAATC--T 1779 |||||||||||||||||||||| | | ||||||||| |||||| ||||| | Sbjct 826 GACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCAT 767 Query 1780 AAATGGCCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCA 1823 |||| ||| | | ||| || ||||||||||| | ||||||||| Sbjct 766 AAATC-CCATT-ATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq5745 Length=45059 Score = 104 bits (114), Expect = 4e-19 Identities = 250/375 (67%), Gaps = 19/375 (5%) Strand=Plus/Plus Query 1482 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTGTGTATTGTCCAGGCTTT-TAGTG 1540 |||||| |||| || || |||| |||| |||||| |||| ||| | | ||| || | Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1541 ATGAGTTTTCCTGCTTGTCCAGGAAATCTTTATAG-------CTGGCCCCCTCTCCAGGA 1593 ||| ||| | | || | ||| ||||||| |||| |||| ||||| Sbjct 43492 -TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCC----CAGGA 43546 Query 1594 TTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAA 1653 ||||| | |||||| |||| || || |||||||||||||| || ||||||||||| | Sbjct 43547 TTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCA 43606 Query 1654 TTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTA- 1712 || |||||||||| ||| || || || || | | | || ||| ||| || Sbjct 43607 TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAA 43666 Query 1713 --TTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACCCGGGAA 1770 | | ||| || ||||| |||||||||||| | | || || || ||| Sbjct 43667 GCTGGAGGGATG---TCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAA 43723 Query 1771 TTGAAATCTAAATGGCCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCACATCGTC 1830 || ||||| | | ||| | | ||||||||||| || |||| ||| ||||| | || Sbjct 43724 TTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTT 43783 Query 1831 TTACCAGTTCGAGAA 1845 ||||| ||| |||| Sbjct 43784 TTACCGATTCTAGAA 43798 >seq22495 Length=567 Score = 95.1 bits (104), Expect = 2e-16 Identities = 223/337 (66%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 1482 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTGTGTATTGTCCAGGCTTTTAGTGA 1541 ||||||||||| || || |||| ||||| |||| |||| ||||| | ||| | Sbjct 473 ATAGAGGGGGGTGTCGACGAAGTGGAATTCTACATTTTGTAAAGTCCAAGTTTTCCAATA 414 Query 1542 TGAGTTTTCCTGCTTGTCCAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAG 1601 ||| || || | || | ||| ||||||| | |||||||||||| || Sbjct 413 TGAATTGGACTCCAAATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAG 354 Query 1602 CACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAATTGGACTG 1661 ||||| | | || || | |||||||||||| || || |||||||| ||||| ||| Sbjct 353 TACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTG 294 Query 1662 CCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTATTGCGGGCT 1721 ||| | || || || | || | | || ||||| ||| || | ||| Sbjct 293 CCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGG 234 Query 1722 GACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACCCGGGAATTGAAATCTAA 1781 || |||||||||||||||||| | | ||||||||| |||||| ||||| || Sbjct 233 GATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCAA 174 Query 1782 ATGGCCACTCAAGTAATTATGTGGGCCTAACGCACGA 1818 | || | | ||| || ||||||||||| | |||| Sbjct 173 AAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 >seq54129 Length=2260 Score = 93.3 bits (102), Expect = 7e-16 Identities = 165/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 1587 TCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTA 1646 |||||||||||| || ||||| ||| || || ||||||||||||| || || ||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1647 CTTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTT 1706 ||| ||||| ||| || | | || || || | || | | | ||||| | Sbjct 2198 CTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAAT 2139 Query 1707 TAGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACCCG 1766 || || | ||| |||||| ||||||||||||||| || | ||||||||| Sbjct 2138 TAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTTT 2079 Query 1767 GGAATTGAAAT--CTAAATGGCCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCA 1823 |||||| |||| ||||| || | | ||| || ||| ||| ||| | ||||||||| Sbjct 2078 GGAATTAAAATTCATAAAT--CCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCA 2022 >seq1993 Length=81530 Score = 91.5 bits (100), Expect = 2e-15 Identities = 185/275 (67%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 1585 TCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCG 1644 || ||||||||||| |||||||| |||| || || ||||||||||||| || |||||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1645 TACTTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGC 1704 ||||| ||| |||||||||| ||| || | | || | | | || ||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTA 74287 Query 1705 TTTAGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACC 1764 ||| || || ||| ||||| |||||||||||| | | || || || Sbjct 74286 ATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTT 74227 Query 1765 CGGGAATTGAAATCTAAATGGCCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCAC 1824 ||||| ||||| | | ||| | | ||||||||||| || |||| ||| | ||| Sbjct 74226 TTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCAA 74167 Query 1825 ATCGTCTTACCAGTTCGAGAATCACCTTCTACAAT 1859 | || ||||| ||| |||| ||||| | ||| Sbjct 74166 ACTGTTTTACCGATTCTAGAAGGTCCTTCAATAAT 74132 >seq33 Length=454124 Score = 89.7 bits (98), Expect = 9e-15 Identities = 192/286 (67%), Gaps = 1/286 (0%) Strand=Plus/Minus Query 1588 CCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTAC 1647 ||||||||||| |||||||| |||| || || | |||||||||||| || || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1648 TTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTT 1707 || ||| |||||||| | || | || | || | | | || ||| || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1708 AGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACCCGG 1767 | || || ||| ||||| |||||||||||| | | || ||||| | Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1768 GAATTGAAATCTAAATGGCCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCACATC 1827 ||||| ||||| | | ||| | | |||||||||||| || |||| ||| ||||| | Sbjct 403122 GAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAACT 403063 Query 1828 GTCTTACCAGTTCGAGAATCACCTTCTACAATCAAACTGATGGGCC 1873 || || || ||| |||| ||||| | ||| | || |||||| Sbjct 403062 GT-TTTTCAATTCTAGAAGGTCCTTCAATAATAATGCTTTTGGGCC 403018 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 1482 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTGTGTATTGTCCAGGCTTTTAGTGA 1541 ||||||||||| || || |||| ||||| ||||| |||| ||||| | ||| | Sbjct 1404 ATAGAGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 1463 Query 1542 TGAGTTTTCCTGCTTGTCCAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAG 1601 ||| || || | |||| ||| ||||||| | |||||||||||| || Sbjct 1464 TGAATTGGACTCCAAATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAG 1523 Query 1602 CACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAATTGGACTG 1661 ||||| ||| || || |||||||||||||| || || |||||||| |||| ||| Sbjct 1524 TACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTG 1583 Query 1662 CCAAT 1666 ||||| Sbjct 1584 CCAAT 1588 >seq4295 Length=67413 Score = 84.2 bits (92), Expect = 4e-13 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 1591 GGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTG 1650 |||||| ||||||||||| ||||||| ||||||||||||||| | || || ||||||||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1651 CAATTGGACTGCCAAT 1666 ||| || | ||||| Sbjct 46783 GCATTTGAGTTCCAAT 46768 >seq4104 Length=64936 Score = 82.4 bits (90), Expect = 1e-12 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 1482 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTGTGTATTGTCCAGGCTTTTAGTGA 1541 ||||||||||| ||||| |||| ||||| ||||| |||| ||||| | ||| | Sbjct 20933 ATAGAGGGGGGTGTTGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 20874 Query 1542 TGAGTTTTCCTGCTTGTCCAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAG 1601 ||| || || | |||| ||| ||||||| | |||||||||||| || Sbjct 20873 TGAATTGGACTCCAAATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAG 20814 Query 1602 CACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTT 1649 ||||| ||| || || |||||||||||||| || || |||||||| Sbjct 20813 TACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq1010 Length=204159 Score = 82.4 bits (90), Expect = 1e-12 Identities = 195/290 (67%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 1588 CCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTAC 1647 || ||||||||||||||||| ||||||| || ||||||||||||| | || |||||| Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTAC 36543 Query 1648 TTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCC-AGTGCTTTAGC-T 1705 ||| || || ||||||| | | || | ||||| || |||| | | ||| || Sbjct 36544 TTGACATGTGATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCAATTTTTTTTGCAA 36603 Query 1706 TTAGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACCC 1765 |||| || | | |||||||| |||| |||||| | | | | || | Sbjct 36604 ATAGG-ATCGAG---ACACATCATCTATGAAATTATACCATGCATTAATCGAAAATGATT 36659 Query 1766 GGGAATTGAAATCTAAATGGCCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCACA 1825 ||||| ||||| | ||| | | ||| ||| |||||||||| | || ||||| | Sbjct 36660 TCGAATTAAAATCCATGAAGCCCATTATGTAGTTACGTGGGCCTAAAGATCGTGCCCATA 36719 Query 1826 TCGTCTTACCAGTTCGAGAATCACCTTCTACAATCAAACTGATGGGCCTG 1875 | ||||| ||| ||| || ||||||| || | ||| | |||||| Sbjct 36720 TTGTCTTCCCAATTCTAGCTGGGCCTTCTAATATGAGACTCTTAGGCCTG 36769 >seq6801 Length=49729 Score = 80.6 bits (88), Expect = 4e-12 Identities = 131/188 (70%), Gaps = 12/188 (6%) Strand=Plus/Plus Query 1482 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTGTGTATTGTCCAGGCTTTTAGTGA 1541 |||||||||| ||||| ||| |||||| ||||| ||| ||||| | ||| Sbjct 46986 ATAGAGGGGGT-GTTGACGAAATGGAATTTTGCATTTTGTCAAGTCCAAGATTTCCAATT 47044 Query 1542 TGAGTTTTCCTGCTTGTCCAGGAAATCTTTATAG-------CTGGCCCCCTCTCCAGGAT 1594 ||| ||| | |||| ||| |||||||| |||| ||||| |||| Sbjct 47045 TGAATTTGAATATAAATCCAAGAACGCTTTATAGGACAAATCTGGACCCCT----AGGAG 47100 Query 1595 TGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAAT 1654 |||| || ||||| |||| || || |||||||||||||| || ||||||||||| || Sbjct 47101 TGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCAT 47160 Query 1655 TGGACTGC 1662 | |||||| Sbjct 47161 TTGACTGC 47168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8372829047310