Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014140.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq3283 84.2 4e-13 seq3439 82.4 1e-12 seq5493 80.6 5e-12 seq815 78.8 2e-11 >seq3283 Length=49157 Score = 84.2 bits (92), Expect = 4e-13 Identities = 152/220 (69%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 1650 TGCATTCGACTCCTCATCCATATATTCTTTATAGGAA-GATCTGGGGCCAGGATTGCAGA 1708 || ||| |||||| ||||| | ||||||||| |||| || ||||||||||| | Sbjct 2326 TGAATTGGACTCCAAATCCAAGAACGTTTTATAGGATTGATCAGGT-CCAGGATTGCAAA 2268 Query 1709 GGAAAATTGTTGGTATTCCACCTTTAATTTGAGTGGGCTTGCCGTACTTCACGTTGCTTT 1768 | | || |||| || || |||||||||||| || || |||||||| | ||| | Sbjct 2267 GTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCT 2208 Query 1769 GCCAGTCTCTTTGGGACCCCATGAATTCTTTCATATGCT------TTAGATAGTGGGGAT 1822 |||| | || || | || | ||| | || ||||| ||| ||| | ||| Sbjct 2207 GCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAG 2148 Query 1823 CTACGTCATCGATGACGTTGTACCAGGCATCGTTTGAATA 1862 ||||| ||||||||||| ||||| ||||| ||||| || Sbjct 2147 GGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTA 2108 >seq3439 Length=62978 Score = 82.4 bits (90), Expect = 1e-12 Identities = 133/192 (69%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 1677 TTTATAGGAAGATCTGGGGCCAGGATTGCAGAGGAAAATTGTTGGTATTCCACCTTTAAT 1736 ||||||||| || || ||| ||||||| || | || |||| || || |||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1737 TTGAGTGGGCTTGCCGTACTTCACGTTGCTTTGCCAGTCTCTTTGGGACCCCATGAATTC 1796 |||| || || |||||||| ||||| ||||| | || || | || | ||| | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1797 TTTCATATGCT------TTAGATAGTGGGGATCTACGTCATCGATGACGTTGTACCAGGC 1850 || ||||| ||| ||| | ||| || |||||||||||||| ||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1851 ATCGTTTGAATA 1862 ||| ||||| || Sbjct 799 ATCATTTGAGTA 788 >seq5493 Length=32325 Score = 80.6 bits (88), Expect = 5e-12 Identities = 134/187 (72%), Gaps = 10/187 (5%) Strand=Plus/Minus Query 1673 ATTCTTTATAGGAAGAT---CTGGGGCCAGGATTGCAGAGGAAAATTGTTGGTATTCCAC 1729 || ||||||||||| || | || || |||||||| | | ||| || ||||||| Sbjct 31588 ATGCTTTATAGGAATATTCTCCGGTGCATGGATTGCACATCACAATACATGTGATTCCAC 31529 Query 1730 CTTTAATTTGAGTGGGCTTGCCGTACTTCACGTTGCTTTGCCAGTCTCTTTGGGACCCCA 1789 |||||||||| || || ||||||||||| || |||||||| ||| |||| | Sbjct 31528 TTTTAATTTGAACTGGTTTACCGTACTTCACATTTGATTGCCAGTTGTATTGAGACCTAA 31469 Query 1790 TGAATTCTTT-CATATGCTTT--AGATA-GT-GGGGATCTACGTCATCGATGACGTTGTA 1844 | ||||| || | |||| ||||| || || || ||||||||| |||| |||||| Sbjct 31468 GTAGCTCTTTCCAGCTTCTTTGCAGATATGTCGGTGA--TACGTCATCAATGATGTTGTA 31411 Query 1845 CCAGGCA 1851 ||| ||| Sbjct 31410 CCATGCA 31404 >seq815 Length=151552 Score = 78.8 bits (86), Expect = 2e-11 Identities = 135/192 (70%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 1677 TTTATAGGAAGATCTGGGGCCAGGATTGCAGAGGAAAATTGTTGGTATTCCACCTTTAAT 1736 ||||||||| ||| || ||||||||||| || | ||| |||| || || |||||||| Sbjct 85439 TTTATAGGATAATCAGGT-CCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAAT 85381 Query 1737 TTGAGTGGGCTTGCCGTACTTCACGTTGCTTTGCCAGTCTCTTTGGGACCCCATGAATTC 1796 |||| ||| || ||||||| | ||| | ||||| | || | || | ||| | Sbjct 85380 TTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTA 85321 Query 1797 TT--TCATA-TGCT---TTAGATAGTGGGGATCTACGTCATCGATGACGTTGTACCAGGC 1850 || | ||| | || ||| ||| | || ||||| ||||||||||| ||||| || Sbjct 85320 TTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGC 85261 Query 1851 ATCGTTTGAATA 1862 ||| ||||| || Sbjct 85260 ATCATTTGAGTA 85249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8737037442675