Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014141.1 Length=2708 Score E Sequences producing significant alignments: (Bits) Value seq3283 87.8 3e-14 seq3439 84.2 4e-13 seq953 78.8 2e-11 seq54129 77.0 6e-11 >seq3283 Length=49157 Score = 87.8 bits (96), Expect = 3e-14 Identities = 193/287 (67%), Gaps = 8/287 (3%) Strand=Plus/Minus Query 1649 gTCCCGGGTTGCATAAAAAGATGGTGGGAATTCCCCCTTTAATTTGAATCGGTTTACCGT 1708 |||| || ||||| | | ||| | ||||| || ||||||||||||| ||||| |||| Sbjct 2282 GTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGT 2223 Query 1709 ATTTCGTGTTGCTCTGCCAATCATGCTGGGCCCCCATGAATTCCTTGA-AGTGCT----- 1762 | || | ||| |||||||| |||| || || | ||| | |||| | |||| Sbjct 2222 ACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCTTA 2164 Query 1763 -TTAGGTAGTGCGGATCTACGTCATCGATGACGTTGTACCATGCATTATTGCTGTACACC 1821 ||| || | |||| ||||| ||||||||||| |||||||||| ||| |||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1822 TTTGGACTCAGGTCTAGATGACCACATAGGTAATTGTGTACCCCCAAAGACCGCGCCCAC 1881 || | | | | || | | || || ||| |||||| || || || || ||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1882 ATCGTCTTCCCCGTTCTGGAATCACCTTCAACGACGATACTCATGGG 1928 || ||||| |||| || ||||||| | || |||||||| Sbjct 2043 GCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1997 >seq3439 Length=62978 Score = 84.2 bits (92), Expect = 4e-13 Identities = 192/287 (67%), Gaps = 8/287 (3%) Strand=Plus/Minus Query 1649 gTCCCGGGTTGCATAAAAAGATGGTGGGAATTCCCCCTTTAATTTGAATCGGTTTACCGT 1708 |||| | ||||| | | ||| | ||||| || ||||||||||||| ||||| |||| Sbjct 962 GTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGT 903 Query 1709 ATTTCGTGTTGCTCTGCCAATCATGCTGGGCCCCCATGAATTCCTTGA-AGTGCT----- 1762 | || | |||| ||||||| |||| || || | ||| | |||| | |||| Sbjct 902 ACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCTTA 844 Query 1763 -TTAGGTAGTGCGGATCTACGTCATCGATGACGTTGTACCATGCATTATTGCTGTACACC 1821 ||| || | |||| || |||||||||||||| |||||||||| ||| |||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1822 TTTGGACTCAGGTCTAGATGACCACATAGGTAATTGTGTACCCCCAAAGACCGCGCCCAC 1881 || | | | | || | | || || ||| |||||| || || || || ||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 724 Query 1882 ATCGTCTTCCCCGTTCTGGAATCACCTTCAACGACGATACTCATGGG 1928 || ||||| |||| || ||||||| | || |||||||| Sbjct 723 GCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 677 >seq953 Length=224861 Score = 78.8 bits (86), Expect = 2e-11 Identities = 193/288 (67%), Gaps = 10/288 (3%) Strand=Plus/Plus Query 1649 gTCCCGGGTTGCATAAAAAGATGGTGGGAATTCCCCCTTTAATTTGAATCGGTTTACCGT 1708 |||| || ||||| || | ||| | ||||| || |||||||||||||| | ||| |||| Sbjct 1841 GTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCGT 1900 Query 1709 ATTTCGTGTTGCTCTGCCAATCATGCTGGGCCCCCATGAATTCCTTGA-AGTGCT----- 1762 | || | ||| |||||||| |||| | || | ||| | |||| | | || Sbjct 1901 ACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACT-GTTGATAATACTTTTTA 1959 Query 1763 -TTAGGTAGTGCGGATCTACGTCATCGATGACGTTGTACCATGCATTATTGCTGTACACC 1821 ||| || | |||| ||||| ||||| ||||| |||||||||| ||| |||| Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTT 2019 Query 1822 TTTGGACTCAGGTCTAGATGACCACA-TAGGTAATTGTGTACCCCCAAAGACCGCGCCCA 1880 || | | | | || | | | | || || ||| |||||| || || || || ||||| Sbjct 2020 TTCGAATTAAAATCCATA-AATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2078 Query 1881 CATCGTCTTCCCCGTTCTGGAATCACCTTCAACGACGATACTCATGGG 1928 || ||||| |||| || ||||||| | || |||||||| Sbjct 2079 TGCTGTTTTCCCTATTCTTGATGTGCCTTCAATAATAATGCTCATGGG 2126 >seq54129 Length=2260 Score = 77.0 bits (84), Expect = 6e-11 Identities = 118/169 (70%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 1649 gTCCCGGGTTGCATAAAAAGATGGTGGGAATTCCCCCTTTAATTTGAATCGGTTTACCGT 1708 |||| || ||||| | | ||| | ||||| || |||||||||||||| ||||| |||| Sbjct 2259 GTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGT 2200 Query 1709 ATTTCGTGTTGCTCTGCCAATCATGCTGGGCCCCCATGAATTCCTTGAAGTGCT------ 1762 | || | ||| ||| || | ||||| || || | ||| | | | | |||| Sbjct 2199 ACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1763 TTAGGTAGTGCGGATCTACGTCATCGATGACGTTGTACCATGCATTATT 1811 ||| || | |||| || || ||||||||||| |||||| ||| ||| Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8548661654260