Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014542.1 Length=2763 Score E Sequences producing significant alignments: (Bits) Value seq3283 102 1e-18 seq3439 100 5e-18 seq22495 96.9 6e-17 seq54129 87.8 3e-14 seq953 82.4 1e-12 seq815 80.6 5e-12 seq3059 78.8 2e-11 seq35612 77.0 6e-11 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 8/170 (5%) Strand=Plus/Minus Query 1701 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATACCCCCTTTAATTTGAATGGGCTTCCC 1760 |||||| |||||||| || | |||| | ||||| || ||||||||||||| || ||||| Sbjct 2284 AGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCC 2225 Query 1761 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1816 |||||||| ||| ||||| | | ||| || || | ||| | |||| | |||| Sbjct 2224 GTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCT 2166 Query 1817 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCA 1863 ||||||||| ||| ||||| || |||||||| ||||| |||||| Sbjct 2165 TAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCA 2116 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 134/184 (73%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 1687 TTATATGATGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATACCCCCTTTAATT 1746 ||||| ||| | |||||| ||||||| || | |||| | ||||| || ||||||||| Sbjct 978 TTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATT 919 Query 1747 TGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCC 1806 |||| || || |||||||||| |||| ||||| | | ||| || || | ||| | Sbjct 918 TGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACT-G 860 Query 1807 TTGA-AGTGCT------TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGC 1859 |||| | |||| ||||||||| ||| || ||||| |||||||| ||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1860 ATCA 1863 |||| Sbjct 799 ATCA 796 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 133/184 (72%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 1687 TTATATGATGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATACCCCCTTTAATT 1746 ||||| ||| | |||||| |||||||| || | |||| | |||| || | ||||||| Sbjct 385 TTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATT 326 Query 1747 TGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCC 1806 |||| || || |||||||||| ||| ||||||| | ||| || || | ||| | Sbjct 325 TGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACT-G 267 Query 1807 TTGA-AGTGCT------TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGC 1859 |||| | |||| ||||||||| ||| | |||||| |||||||| ||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1860 ATCA 1863 |||| Sbjct 206 ATCA 203 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 120/168 (71%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1702 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATACCCCCTTTAATTTGAATGGGCTTCCCG 1761 ||||| |||||||| || | |||| | ||||| || |||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1762 TACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCT----- 1816 ||||||| ||| || |||| ||| || || | ||| | | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1817 -TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCA 1863 ||||||||| ||| || || || |||||||| ||||| ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCA 2093 >seq953 Length=224861 Score = 82.4 bits (90), Expect = 1e-12 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 1687 TTATATGATGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATACCCCCTTTAATT 1746 ||||| ||| | |||||| |||||||| | | |||| | ||||| || ||||||||| Sbjct 1825 TTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATT 1884 Query 1747 TGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCC 1806 ||||| | || |||||||||| ||| ||||| | | ||| | || | ||| | Sbjct 1885 TGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACT-G 1943 Query 1807 TTGA-AGTGCT------TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGC 1859 |||| | | || ||||||||| ||| ||||| || || ||||| ||||| || Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1860 ATCA 1863 |||| Sbjct 2004 ATCA 2007 >seq815 Length=151552 Score = 80.6 bits (88), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 8/170 (5%) Strand=Plus/Minus Query 1701 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATACCCCCTTTAATTTGAATGGGCTTCCC 1760 |||||| |||||||| || | ||| | ||||| || |||||||||||| ||| || | Sbjct 85425 AGGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTC 85366 Query 1761 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1816 |||||||| ||| | ||||| | ||| || || | ||| | |||| | | || Sbjct 85365 GTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACT-ATTGATAATACTTCT 85307 Query 1817 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCA 1863 ||||||||| | | ||||| || |||||||| ||||| |||||| Sbjct 85306 AAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCA 85257 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 110/152 (72%), Gaps = 8/152 (5%) Strand=Plus/Minus Query 1701 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATACCCCCTTTAATTTGAATGGGCTTCCC 1760 |||||| |||||||| || | |||| | ||||| || |||||||||||||| || || || Sbjct 20420 AGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCC 20361 Query 1761 GTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1816 ||| |||| ||| | ||||| | ||| || || | ||| | |||| | |||| Sbjct 20360 GTAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCT 20302 Query 1817 ---TTAAATAATGCGGGTCTACGTCATCAATG 1845 ||||||||| ||| ||||| |||||| Sbjct 20301 TAATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1687 TTATATGATGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATACCCCCTTTAATT 1746 ||||| ||| | |||||| |||||||| || | |||| | ||||| || ||||||||| Sbjct 1492 TTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATT 1551 Query 1747 TGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCA 1781 |||| || || |||||||||| |||| ||||| Sbjct 1552 TGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8724494261210