Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014631.1 Length=3065 Score E Sequences producing significant alignments: (Bits) Value seq490 82.4 1e-12 seq5745 78.8 2e-11 >seq490 Length=137872 Score = 82.4 bits (90), Expect = 1e-12 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 2031 ATTACATAAAATAATTGAGGGTATTCCACCTTTAATCTGAACAGGCTTTCCATATTTGCA 2090 ||| |||| | |||||| ||||||||||||||||| || | ||||| ||||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 2091 GTTGCTTTGCCAATCATGTTGGGCCCCAATAAGCTCTTTCCAATGCTT 2138 | |||||| ||| | ||||||||||||||| |||||||||| Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTT 70511 >seq5745 Length=45059 Score = 78.8 bits (86), Expect = 2e-11 Identities = 123/173 (71%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 2009 TAAAGCTGGATCCCTCACCAGGATTACATAAAATAATTGAGGGTATTCCACCTTTAATCT 2068 |||| ||||| ||| ||||||| || | | || | || || ||||||||||| | Sbjct 43528 TAAATCTGGACCCC----CAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTT 43583 Query 2069 GAACAGGCTTTCCATA-TTTGCAGTTGCTTTGCCAATCATGTTGGGCCCCAATAAGCTCT 2127 |||| || || || || |||||| ||| ||||||| ||| || || || | || | Sbjct 43584 GAACTGGTTTGCCGTACTTTGCATTTG-ACTGCCAATTGCATTGTGCTCCTATGAACTGT 43642 Query 2128 TTCCAATGCTTTAATTTTAAATAAGATGGTGCTATGTCATCAATGACATTATA 2180 | |||| ||| ||||||||| ||| | |||||||||||||| ||||| Sbjct 43643 TGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTATA 43695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9686506934250