Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014645.1 Length=2792 Score E Sequences producing significant alignments: (Bits) Value seq3439 107 3e-20 seq3283 104 4e-19 seq22495 86.0 1e-13 seq953 80.6 5e-12 seq54129 77.0 6e-11 >seq3439 Length=62978 Score = 107 bits (118), Expect = 3e-20 Identities = 189/273 (69%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 1700 TTATATGATGATGTCGGTCCTTGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATT 1759 ||||| ||| || ||||| ||||||| || | |||| | ||||| || ||||||||| Sbjct 978 TTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATT 919 Query 1760 TGAATGGGCTTCCCGTACTTGGTGTTGCTTCGCCAGTCTCTTTGGGCCCCCATAAACTCT 1819 |||| || || |||||||| | |||| |||| | || || || || | |||| | Sbjct 918 TGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGT 859 Query 1820 TTAAAGTGTT------TTAGATAGTGGGGATCTACGTCATCAATGACGTTATACCAAGCA 1873 | | | || | ||| ||| | ||| || ||||| |||||||||||||| ||| Sbjct 858 TGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCA 799 Query 1874 TCATTTGAATACACCTTTGGGCTT-AGATCAAGATGACCACACAAATAGTTGTGTGGACC 1932 |||||||| ||| ||||| || | ||| | | || | ||||||||||| || Sbjct 798 TCATTTGAGTAC-GTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCC 740 Query 1933 TAATGACCTGGCCCACATGGTCTTGCCTGTTCT 1965 |||||| | ||||| || || ||| |||| Sbjct 739 TAATGAACGAGCCCATGCTGTTTTCCCTATTCT 707 >seq3283 Length=49157 Score = 104 bits (114), Expect = 4e-19 Identities = 179/258 (69%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1715 GGTCCTTGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1774 ||||| ||||||| || | |||| | ||||| || ||||||||||||| || |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1775 TACTTGGTGTTGCTTCGCCAGTCTCTTTGGGCCCCCATAAACTCTTTAAAGTGTT----- 1829 ||||| | ||| |||| | || || || || | |||| || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1830 -TTAGATAGTGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACC 1888 ||| ||| | ||| ||||| || |||||||||||||| ||||||||||| ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTAC-GT 2105 Query 1889 TTTGGGCTT-AGATCAAGATGACCACACAAATAGTTGTGTGGACCTAATGACCTGGCCCA 1947 ||||| || | ||| | | || | ||||||||||| |||||||| | ||||| Sbjct 2104 TTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 Query 1948 CATGGTCTTGCCTGTTCT 1965 || || ||| |||| Sbjct 2044 TGCTGTTTTCCCTATTCT 2027 >seq22495 Length=567 Score = 86.0 bits (94), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 1715 GGTCCTTGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1774 ||||| ||||||| || | |||| | |||| || | ||||||||||| || || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1775 TACTTGGTGTTGCTTCGCCAGTCTCTTTGGGCCCCCATAAACTCTTTAAAGTGTTT---- 1830 ||||| | ||| |||||| | || || || | |||| || | | || || Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1831 --TAGATAGTGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACC 1888 || ||| | ||| | |||||| |||||||||||||| ||||||||||| ||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTAC-GT 192 Query 1889 TTTGGGCTT-AGATCAAGATGACCACACAAATAGTTGTGTGGACCTAATGA 1938 ||||| || | ||| | | || | ||||||||||| |||||||| Sbjct 191 TTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq953 Length=224861 Score = 80.6 bits (88), Expect = 5e-12 Identities = 176/258 (68%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1715 GGTCCTTGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1774 ||||| ||||||| | | |||| | ||||| || |||||||||||||| | || ||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1775 TACTTGGTGTTGCTTCGCCAGTCTCTTTGGGCCCCCATAAACTCTT--TAA-AGTGTT-- 1829 ||||| | ||| |||| | || || | || | |||| || ||| | | || Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1830 -TTAGATAGTGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACC 1888 ||| ||| | ||| ||||| || || ||||||||||| ||||||||||| ||| Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTT 2019 Query 1889 TTTGGGCTTAGATCAAGATGACCACA-CAAATAGTTGTGTGGACCTAATGACCTGGCCCA 1947 || | | | ||| | | | | || | ||||||||||| |||||||| | ||||| Sbjct 2020 TTCGAATTAAAATCCATA-AATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2078 Query 1948 CATGGTCTTGCCTGTTCT 1965 || || ||| |||| Sbjct 2079 TGCTGTTTTCCCTATTCT 2096 >seq54129 Length=2260 Score = 77.0 bits (84), Expect = 6e-11 Identities = 127/180 (71%), Gaps = 14/180 (8%) Strand=Plus/Minus Query 1715 GGTCCTTGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1774 ||||| ||||||| || | |||| | ||||| || |||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1775 TACTTGGTGTTGCTTCGCCAGTCTCTT----TGGGCCCCCATAAACTCTT--TAAAG--T 1826 ||||| | ||| ||| ||| || || || || | |||| || ||| | | Sbjct 2200 TACTTTGCATTG----GCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTT 2145 Query 1827 GTT--TTAGATAGTGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTTGAATA 1884 || ||| ||| | ||| || || || |||||||||||||| |||||||||| || Sbjct 2144 CTTAATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8813762250075